{"id":"W2108467787","doi":"10.1186/1742-4690-11-55","title":"Discovery and full genome characterization of a new SIV lineage infecting red-tailed guenons (Cercopithecus ascanius schmidti) in Kibale National Park, Uganda","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Office of Research Infrastructure Programs, National Institutes of Health; National Center for Research Resources; Fogarty International Center; National Institute of Allergy and Infectious Diseases; Economic and Social Research Council; Centers for Disease Control and Prevention; U.S. Department of Health and Human Services; National Institutes of Health; National Science Foundation","keywords":"Biology; Genetic diversity; Simian immunodeficiency virus; National park; Lineage (genetic); Zoology; Virology; Human immunodeficiency virus (HIV); Ecology; Demography; Genetics; Population; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033744,0.0001497069,0.0003436447,0.0002393801,0.00007983883,0.00001429276,0.0001062169,0.0002445062,0.0002206637],"category_scores_gemma":[0.0003217827,0.0001327679,0.00005180858,0.000156997,0.0001627189,0.0001366207,0.00009760979,0.0002620591,0.0001301157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000708802,"about_ca_system_score_gemma":0.0001579299,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001839671,"about_ca_topic_score_gemma":0.0003078465,"domain_scores_codex":[0.9986535,0.0003146276,0.0003211352,0.000303913,0.00005449219,0.0003523131],"domain_scores_gemma":[0.9993894,0.0001998814,0.0001503032,0.0001665933,0.00005480936,0.00003905332],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003145443,0.0001127823,0.1029386,0.00001969555,0.00009990676,0.000005400121,0.0002327331,0.000007694952,0.8943428,0.0004461514,0.00003374883,0.001445908],"study_design_scores_gemma":[0.003816967,0.001263768,0.9708922,0.00002362482,0.00003054366,0.00007180518,0.00002781289,0.00002550065,0.01567493,0.0001625319,0.007839195,0.0001711127],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976473,0.0003138628,0.0004521605,0.0003185405,0.0001211283,0.0002311511,0.00008642724,0.00002189544,0.0008075426],"genre_scores_gemma":[0.9979692,0.0001579366,0.00005465472,0.0000751281,0.00006715974,0.00001021818,0.0005450281,0.00001416033,0.001106562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8786679,"threshold_uncertainty_score":0.5414118,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01076019068500519,"score_gpt":0.2395336799137153,"score_spread":0.2287734892287101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}