{"id":"W2108528276","doi":"10.1038/mtna.2014.31","title":"A Conserved Target Site in HIV-1 Gag RNA is Accessible to Inhibition by Both an HDV Ribozyme and a Short Hairpin RNA","year":2014,"lang":"en","type":"article","venue":"Molecular Therapy — Nucleic Acids","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke; Atlantic Cancer Research Institute; McGill University; Jewish General Hospital","funders":"Los Alamos National Laboratory","keywords":"Ribozyme; RNA; Biology; Small hairpin RNA; Ligase ribozyme; Mammalian CPEB3 ribozyme; Hairpin ribozyme; Stem-loop; Virology; Antisense RNA; Computational biology; RNA interference; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000179722,0.0002257435,0.0003250303,0.0001536318,0.0001318174,0.0002640623,0.0001546222,0.000292726,0.000841474],"category_scores_gemma":[0.0001888702,0.0001688401,0.000258973,0.00007865256,0.0002656831,0.0001255979,0.0001624728,0.0003880241,0.0002450854],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001614785,"about_ca_system_score_gemma":0.0001878757,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002385506,"about_ca_topic_score_gemma":0.0004267559,"domain_scores_codex":[0.9998094,0.0000367472,0.00001240623,0.00004379321,0.00007163041,0.00002598994],"domain_scores_gemma":[0.9998461,0.00006399636,0.00003846993,0.0000199753,0.00001217235,0.00001929564],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002353992,0.000006889122,0.0001210322,0.00001074283,0.000001773379,0.00002032849,0.000004125748,0.00006134436,0.9990457,0.00004752841,0.000002536869,0.0006544388],"study_design_scores_gemma":[0.000008149706,0.0002976319,0.002201833,0.00000296157,0.00001058382,0.0002230993,0.000008253253,0.0005728366,0.9961988,0.00005148022,0.0004214521,0.000002894878],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898748,0.0008336352,0.00819956,0.00003024151,0.00001070187,0.00003084027,0.00006975666,0.0000529367,0.0008973866],"genre_scores_gemma":[0.9953836,0.0001458008,0.003742629,0.00003177507,0.000003717764,0.00001317613,0.000108693,0.000009464969,0.0005612857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000841474,"threshold_uncertainty_score":0.002815008,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01142781977942469,"score_gpt":0.2591636182804051,"score_spread":0.2477357985009804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}