{"id":"W2108528276","doi":"10.1038/mtna.2014.31","title":"A Conserved Target Site in HIV-1 Gag RNA is Accessible to Inhibition by Both an HDV Ribozyme and a Short Hairpin RNA","year":2014,"lang":"en","type":"article","venue":"Molecular Therapy — Nucleic Acids","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke; Atlantic Cancer Research Institute; McGill University; Jewish General Hospital","funders":"Los Alamos National Laboratory","keywords":"Ribozyme; RNA; Biology; Small hairpin RNA; Ligase ribozyme; Mammalian CPEB3 ribozyme; Hairpin ribozyme; Stem-loop; Virology; Antisense RNA; Computational biology; RNA interference; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003351533,0.000272799,0.0003535988,0.0001825834,0.0001633137,0.00007154765,0.0001913796,0.0002341698,0.0006169385],"category_scores_gemma":[0.00002366155,0.0002417363,0.00007537179,0.0002135626,0.0001561865,0.0001590217,0.00008936949,0.0002686283,0.0005461646],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006052163,"about_ca_system_score_gemma":0.00004394229,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002936341,"about_ca_topic_score_gemma":0.00006748921,"domain_scores_codex":[0.9981142,0.000434235,0.0002642383,0.000535379,0.00008762041,0.0005643043],"domain_scores_gemma":[0.9993265,0.00002904869,0.00004254723,0.0004295597,0.0000427025,0.0001296539],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005258883,0.0003435606,0.01090272,0.000008998508,0.0001278107,0.00004974354,0.0009450923,0.000003204035,0.971487,0.00008299186,0.005854696,0.009668292],"study_design_scores_gemma":[0.005600145,0.00154188,0.01311846,0.00005486281,0.00001619327,0.0000302491,0.0001033722,0.00009211641,0.922339,0.0003054734,0.05637615,0.0004221661],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929976,0.002228923,0.00179893,0.001423735,0.00004902558,0.0005430843,0.0001559433,0.00006971358,0.0007330212],"genre_scores_gemma":[0.9954717,0.000210688,0.0005123682,0.002436543,0.00001305847,0.00008863703,0.0006548952,0.00004220441,0.0005698649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05052146,"threshold_uncertainty_score":0.9857722,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01142781977942469,"score_gpt":0.2591636182804051,"score_spread":0.2477357985009804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}