{"id":"W2108640362","doi":"10.1146/annurev-genom-090314-050032","title":"The Theory and Practice of Genome Sequence Assembly","year":2015,"lang":"en","type":"review","venue":"Annual Review of Genomics and Human Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Genome; Hybrid genome assembly; DNA sequencing; Sequence (biology); Computational biology; Whole genome sequencing; Biology; Genomics; Sequence assembly; Personal genomics; Data science; Genetics; Computer science; DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002652656,0.0004020282,0.001261458,0.00004098494,0.0001684905,0.00002597014,0.0004639169,0.0002077154,0.000001310207],"category_scores_gemma":[0.0003826715,0.0002858206,0.0002403423,0.00007870615,0.0005420022,0.000001553081,0.0006766243,0.000151604,0.000001235389],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001823781,"about_ca_system_score_gemma":0.0003255686,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006345201,"about_ca_topic_score_gemma":0.000005544315,"domain_scores_codex":[0.9976562,0.0004975252,0.0009628782,0.0004478083,0.0001769283,0.0002586421],"domain_scores_gemma":[0.9973851,0.0002780819,0.001002229,0.0006876554,0.0005293544,0.0001175699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003853895,0.00006419062,0.000005608823,0.0481852,0.001090317,0.000002980893,0.0002808473,0.00000136113,0.002672344,0.006874141,0.001002534,0.939782],"study_design_scores_gemma":[0.0001003988,0.0004224057,0.00001027068,0.002852116,0.001046238,0.00007762814,0.0001502887,1.721817e-7,0.00001756487,0.0003797673,0.9946568,0.0002863322],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004704822,0.9971747,0.0000110557,0.00002834732,0.0001010897,0.0007382793,0.0004933067,0.000001193545,0.0009815033],"genre_scores_gemma":[0.0001703882,0.9986321,0.0004401051,0.0001447855,0.0001662723,0.00003326865,0.0001005448,0.00005298186,0.0002595293],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9936543,"threshold_uncertainty_score":0.9999594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04260279921653539,"score_gpt":0.3625770260286372,"score_spread":0.3199742268121019,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}