{"id":"W2108718991","doi":"10.1128/aem.01541-09","title":"Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":21757,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; University of British Columbia","funders":"Alfred P. Sloan Foundation; National Science Foundation","keywords":"Laptop; Software; Pyrosequencing; Computer science; Metagenomics; Data mining; Computational biology; Biology; Software engineering; Genetics; Gene; Programming language; Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003680745,0.002120772,0.001294109,0.003254986,0.0008929503,0.0025255,0.003198717,0.00111928,0.004319092],"category_scores_gemma":[0.004998285,0.001079638,0.002291945,0.002014172,0.0005245908,0.002099693,0.003725023,0.002984513,0.003801187],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005575808,"about_ca_system_score_gemma":0.001147629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001625872,"about_ca_topic_score_gemma":0.002112289,"domain_scores_codex":[0.9986464,0.0002662122,0.000125714,0.0003286614,0.0005275402,0.0001054305],"domain_scores_gemma":[0.9987367,0.0003642701,0.0002029574,0.0002502681,0.0002734001,0.0001724612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009448345,0.0003929288,0.01367558,0.003591501,0.001674342,0.001118072,0.001740932,0.0107274,0.3130131,0.01198472,0.06292078,0.5782159],"study_design_scores_gemma":[0.0004008847,0.0009824877,0.02143275,0.0008928699,0.0006306983,0.006082271,0.0005328998,0.1408115,0.1569052,0.02753489,0.6426715,0.001121994],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01929592,0.001539617,0.8979265,0.000251919,0.0003539871,0.0004627825,0.005363323,0.07163616,0.003169745],"genre_scores_gemma":[0.02052444,0.0007677022,0.9611644,0.0002912835,0.00009715032,0.0005947467,0.009300779,0.00489715,0.002362453],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.004319092,"threshold_uncertainty_score":0.01946592,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02640740679992318,"score_gpt":0.2161884023350541,"score_spread":0.1897809955351309,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}