{"id":"W2108760304","doi":"10.1093/gbe/evr045","title":"Increased Polymorphism Near Low-Complexity Sequences across the Genomes of Plasmodium falciparum Isolates","year":2011,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Evolutionary biology; Genetics; Phylogenetics; Plasmodium falciparum; Genome size; Coding region; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003598404,0.0001427898,0.0001635393,0.00001598323,0.0002908582,0.000009120094,0.0002237986,0.0002303111,0.00005125231],"category_scores_gemma":[0.0000306119,0.0001010918,0.00006656218,0.00005689999,0.0007100669,0.000005776967,0.0001252835,0.00006227985,0.00001165135],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009505337,"about_ca_system_score_gemma":0.00004996445,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004965778,"about_ca_topic_score_gemma":0.00006519793,"domain_scores_codex":[0.9990442,0.0001522044,0.0002023023,0.0002797316,0.00003758918,0.0002840076],"domain_scores_gemma":[0.9994968,0.00001598925,0.0001282123,0.0002597979,0.00004642834,0.00005275154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002060588,0.00002945187,0.01503424,0.00001419074,0.00005095705,3.983043e-7,0.0004429422,0.000001314234,0.9816548,0.001921352,0.0000102929,0.0006340475],"study_design_scores_gemma":[0.0006724406,0.001091215,0.3993281,0.00001542193,0.00005297674,0.00005620327,0.0005820969,0.00007491194,0.5660046,0.02823179,0.003439122,0.0004511787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925039,0.005206485,0.001563777,0.00008138598,0.0001238007,0.0001733721,0.00008954565,0.00001095766,0.0002467918],"genre_scores_gemma":[0.9985514,0.0003147791,0.0008078314,0.00008010375,0.00009390841,0.00002316426,0.00006005619,0.000008746161,0.00005997678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4156502,"threshold_uncertainty_score":0.4122404,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02503746761926009,"score_gpt":0.2478037461666373,"score_spread":0.2227662785473772,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}