{"id":"W2108983368","doi":"10.1371/journal.pone.0068607","title":"Bioinformatics of Recent Aqua- and Orthoreovirus Isolates from Fish: Evolutionary Gain or Loss of FAST and Fiber Proteins and Taxonomic Implications","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Reoviridae; Genome; Phylogenetic tree; Phylogenetics; Monophyly; Genetics; Subfamily; Evolutionary biology; Virology; Zoology; Gene; Virus; Rotavirus; Clade","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000566027,0.0004485,0.0005193704,0.001778488,0.0005748799,0.0007339917,0.0003510313,0.0004782708,0.001216138],"category_scores_gemma":[0.001207993,0.0001799489,0.0007724624,0.001453757,0.0003122476,0.0005306557,0.000591978,0.0004982575,0.0006778228],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004122871,"about_ca_system_score_gemma":0.0005744512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003816365,"about_ca_topic_score_gemma":0.007557334,"domain_scores_codex":[0.9995148,0.00004279005,0.0000596409,0.0001941418,0.0001005131,0.00008798825],"domain_scores_gemma":[0.9993671,0.0001133699,0.0001846626,0.00004587966,0.0001462364,0.0001428584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002147689,0.0002408581,0.5097609,0.001171,0.000391002,0.003798505,0.00197382,0.002888161,0.4063677,0.0004704813,0.00301106,0.06777887],"study_design_scores_gemma":[0.00006814395,0.0007055505,0.9178959,0.0001865196,0.0005623179,0.004658413,0.002647746,0.01802261,0.03122899,0.0004963308,0.0234373,0.0000902005],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929512,0.0008956664,0.001569862,0.00009753711,0.00003041499,0.0000401654,0.003389132,0.00008444209,0.000941698],"genre_scores_gemma":[0.9681717,0.0007231039,0.008958808,0.0001413076,0.00002624848,0.00005528599,0.02050527,0.00008652618,0.001331921],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003816365,"threshold_uncertainty_score":0.007588327,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06958283560594777,"score_gpt":0.277436156032435,"score_spread":0.2078533204264872,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}