{"id":"W2108983368","doi":"10.1371/journal.pone.0068607","title":"Bioinformatics of Recent Aqua- and Orthoreovirus Isolates from Fish: Evolutionary Gain or Loss of FAST and Fiber Proteins and Taxonomic Implications","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Reoviridae; Genome; Phylogenetic tree; Phylogenetics; Monophyly; Genetics; Subfamily; Evolutionary biology; Virology; Zoology; Gene; Virus; Rotavirus; Clade","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000877956,0.00008325259,0.0003324503,0.00006569628,0.00003247109,0.000006104106,0.00003783162,0.00005732928,0.0003529355],"category_scores_gemma":[0.0003600433,0.0000622958,0.00001602606,0.00005265538,0.000261295,0.0001064494,0.00008620043,0.00009981334,0.000008787415],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001727544,"about_ca_system_score_gemma":0.00003672777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003759775,"about_ca_topic_score_gemma":0.00006210853,"domain_scores_codex":[0.9992586,0.00003949966,0.0003338315,0.0001223018,0.00007248105,0.0001732903],"domain_scores_gemma":[0.9993995,0.00007783982,0.0001096443,0.0001560076,0.0001089079,0.0001481095],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001079613,0.00141138,0.8013209,0.001462816,0.0007458692,0.00000394509,0.0004675063,0.000001651379,0.1364668,0.0000623593,0.004736561,0.05224067],"study_design_scores_gemma":[0.002099555,0.002010427,0.983215,0.0005637206,0.0001253953,0.00004424724,0.0002805218,0.006524537,0.003997398,0.0004977189,0.0005109219,0.0001305847],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949965,0.0003518364,0.0001149394,0.003360466,0.000002800126,0.0007400085,0.000257731,0.000008910321,0.0001667562],"genre_scores_gemma":[0.9572981,0.00526562,0.03688196,0.0001825431,0.00002862578,0.0001024787,0.00008710902,0.000008854598,0.0001446858],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1818941,"threshold_uncertainty_score":0.3864396,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06958283560594777,"score_gpt":0.277436156032435,"score_spread":0.2078533204264872,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}