{"id":"W2109137719","doi":"10.1128/mbio.01157-14","title":"Multisubstrate Isotope Labeling and Metagenomic Analysis of Active Soil Bacterial Communities","year":2014,"lang":"en","type":"article","venue":"mBio","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":141,"is_retracted":false,"has_abstract":true,"ca_institutions":"Iogen Corporation; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Stable-isotope probing; Metagenomics; Xylose; Alphaproteobacteria; Biology; Soil microbiology; Biochemistry; Cellobiose; Arabinose; Actinobacteria; Glycoside hydrolase; Acidobacteria; Microbiology; Bacteria; Gene; Microorganism; Cellulose; 16S ribosomal RNA; Genetics; Cellulase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000206315,0.00006767322,0.0002124436,0.00004008438,0.0001311606,0.000006898442,0.0001654646,0.00005782961,0.004429792],"category_scores_gemma":[0.00001084723,0.00006453523,0.00004198143,0.0001141505,0.0002859574,0.00005702712,0.0002018026,0.0001111945,0.00004220153],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001488952,"about_ca_system_score_gemma":0.000002524346,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004307223,"about_ca_topic_score_gemma":0.02894731,"domain_scores_codex":[0.9993782,0.0002973676,0.0001170703,0.00007495024,0.00002495244,0.000107474],"domain_scores_gemma":[0.9995404,0.0001541656,0.0000709083,0.0002058192,0.000004677465,0.00002405671],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001094828,0.00009103002,0.0310415,0.000007835645,0.0004810938,2.998264e-7,0.005377423,0.001938128,0.9567031,0.0001675843,0.0001462552,0.003936217],"study_design_scores_gemma":[0.0007746574,0.0002334166,0.9341609,0.00000616929,0.0007322567,0.000001701163,0.001140206,0.006337992,0.05075355,0.000753545,0.00480965,0.0002959294],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976733,0.000007296186,0.00002721014,0.0000251054,0.00004368837,0.00004311015,0.00002170537,0.000007090184,0.002151435],"genre_scores_gemma":[0.9995001,0.00002058032,0.0002160897,0.00009705185,0.00000773534,0.000001604014,0.00007009946,0.000003408996,0.00008335731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9059496,"threshold_uncertainty_score":0.9964803,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01231854767758869,"score_gpt":0.2181601717875351,"score_spread":0.2058416241099464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}