{"id":"W2109137719","doi":"10.1128/mbio.01157-14","title":"Multisubstrate Isotope Labeling and Metagenomic Analysis of Active Soil Bacterial Communities","year":2014,"lang":"en","type":"article","venue":"mBio","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":141,"is_retracted":false,"has_abstract":true,"ca_institutions":"Iogen Corporation; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Stable-isotope probing; Metagenomics; Xylose; Alphaproteobacteria; Biology; Soil microbiology; Biochemistry; Cellobiose; Arabinose; Actinobacteria; Glycoside hydrolase; Acidobacteria; Microbiology; Bacteria; Gene; Microorganism; Cellulose; 16S ribosomal RNA; Genetics; Cellulase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002662178,0.000554411,0.0003276062,0.0006565891,0.0003093283,0.000386008,0.0004175388,0.0004563755,0.0003323051],"category_scores_gemma":[0.000273132,0.0002136104,0.0003471455,0.0007268618,0.0002341193,0.0002209402,0.0003151475,0.0003603364,0.0002516187],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006759447,"about_ca_system_score_gemma":0.0007540826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01401477,"about_ca_topic_score_gemma":0.02930731,"domain_scores_codex":[0.999612,0.00003946635,0.00001367548,0.0001215607,0.0001530548,0.00006026645],"domain_scores_gemma":[0.9998145,0.00002542074,0.00003395182,0.000025231,0.00006525097,0.00003575584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000433876,0.00001406916,0.002632302,0.00003034323,0.00001387112,0.000009882783,0.00002538158,0.0001239523,0.9926543,0.00003155896,0.00001155788,0.004409344],"study_design_scores_gemma":[0.00001554755,0.0003395445,0.09426457,0.00001258203,0.00009784105,0.000170772,0.0001606678,0.006759836,0.8953434,0.0001903341,0.002621642,0.00002323419],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9768907,0.001355981,0.01821651,0.00007104271,0.00001192049,0.00008216003,0.002298142,0.000124194,0.0009494018],"genre_scores_gemma":[0.9430485,0.001558032,0.04837153,0.0001133836,0.00001422353,0.0001244019,0.004599903,0.00006022917,0.00210967],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01401477,"threshold_uncertainty_score":0.02786642,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01231854767758869,"score_gpt":0.2181601717875351,"score_spread":0.2058416241099464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}