{"id":"W2109146943","doi":"10.1186/s13568-014-0037-8","title":"Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains","year":2014,"lang":"en","type":"article","venue":"AMB Express","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère des relations internationales et de la Francophonie; Genome Canada","keywords":"Pseudomonas putida; Polyhydroxyalkanoates; Pseudomonas; Biology; Genome; Microbiology; Pseudomonadales; Pseudomonas aeruginosa; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001027624,0.0001469126,0.0001641785,0.00003422974,0.00005074091,0.00002265799,0.0001102154,0.00008990656,0.00001482009],"category_scores_gemma":[0.00002426967,0.0001221883,0.00002774138,0.00005880602,0.00006717536,0.000008933644,0.00005757868,0.00007292719,0.000002104263],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003866141,"about_ca_system_score_gemma":0.00001843771,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001944686,"about_ca_topic_score_gemma":0.00001912071,"domain_scores_codex":[0.9991627,0.00003621723,0.0001645851,0.0003565528,0.0001163157,0.0001636395],"domain_scores_gemma":[0.9994358,0.000003390737,0.0001332759,0.0002760166,0.00009180283,0.00005966449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007760157,0.00009481198,0.001410466,0.00003984335,0.00004191538,1.23012e-7,0.0001953795,0.0000607772,0.9974473,0.0001842677,0.0000981137,0.0003494603],"study_design_scores_gemma":[0.0006106337,0.0002226608,0.04039992,0.00002017215,0.00001946926,0.00001807233,0.00004709547,0.00004825769,0.9354747,0.000006054795,0.02295088,0.0001820765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954298,0.0004912741,0.002788522,0.0002307449,0.00007003936,0.000199654,0.0000331095,0.00001618622,0.0007406988],"genre_scores_gemma":[0.9973317,0.00003497424,0.0006445259,0.0001711781,0.0002565463,0.00001550722,0.0000840487,0.00002702747,0.001434445],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06197254,"threshold_uncertainty_score":0.4982693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01010035745321628,"score_gpt":0.2341434341108684,"score_spread":0.2240430766576522,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}