{"id":"W2109187906","doi":"10.1128/jvi.01329-08","title":"Biogenesis of Cytoplasmic Membranous Vesicles for Plant Potyvirus Replication Occurs at Endoplasmic Reticulum Exit Sites in a COPI- and COPII-Dependent Manner","year":2008,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":188,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Agriculture and Agri-Food Canada; Universiteit Utrecht; Oxford Brookes University; Oregon State University; Samuel Roberts Noble Foundation","keywords":"COPI; COPII; Biology; Endoplasmic reticulum; Cell biology; Golgi apparatus; Vesicle; Secretion; Potyvirus; Vesicular transport protein; Secretory pathway; Virology; Biochemistry; Virus; Plant virus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004241371,0.0001178967,0.0003866416,0.0001022429,0.00013032,0.000006736823,0.0001885787,0.0001035415,0.00002475366],"category_scores_gemma":[0.0002402456,0.00005086007,0.00008103679,0.0001632149,0.0002002347,0.00007608548,0.00008840962,0.0001081089,0.000003720419],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003386166,"about_ca_system_score_gemma":0.00001522377,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000117777,"about_ca_topic_score_gemma":0.0009090777,"domain_scores_codex":[0.9987396,0.0001179406,0.0004611682,0.0002113129,0.0002085179,0.0002614675],"domain_scores_gemma":[0.998717,0.0007027989,0.0003500733,0.00006028991,0.0000933773,0.00007647593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008281007,0.00009482416,0.04641898,0.00001723017,0.00003971234,0.00006397797,0.00010209,0.00001358923,0.9499963,0.00002017892,0.001812607,0.0005924067],"study_design_scores_gemma":[0.001157142,0.001958357,0.3492406,0.000036496,0.00003584365,0.001685942,0.0001415632,0.0001583448,0.6402239,0.0003031302,0.004894107,0.0001645319],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966733,0.001523529,0.000001340861,0.001120252,0.00005790019,0.0002088039,0.0003805643,0.00000591216,0.00002834297],"genre_scores_gemma":[0.9931017,0.006526268,0.00009434569,0.000115014,0.00008003481,0.00001297062,0.00002285124,0.000001296066,0.00004551463],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3097723,"threshold_uncertainty_score":0.2074013,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04778272635640089,"score_gpt":0.2587292676373394,"score_spread":0.2109465412809385,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}