{"id":"W2109203567","doi":"10.1186/s12859-015-0805-8","title":"Revisiting operons: an analysis of the landscape of transcriptional units in E. coli","year":2015,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Andlinger Center for Energy and the Environment, Princeton University; U.S. Department of Energy; Canadian Association for the Study of the Liver; National Science Foundation","keywords":"Operon; Computational biology; DNA microarray; Biology; Genetics; Escherichia coli; Gene; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002525896,0.0003002961,0.0004995829,0.0008671609,0.0003763466,0.0008012432,0.000538816,0.0004228137,0.001077146],"category_scores_gemma":[0.001165534,0.0001960293,0.0007053962,0.001247877,0.0003825661,0.0004844107,0.000464889,0.0003985514,0.0001583501],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006947182,"about_ca_system_score_gemma":0.0005810917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007417689,"about_ca_topic_score_gemma":0.00547509,"domain_scores_codex":[0.9998653,0.00002784411,0.000007572897,0.00004208183,0.0000282714,0.00002889848],"domain_scores_gemma":[0.9996073,0.0002408427,0.00003756442,0.00003351408,0.00004315174,0.00003774887],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0005645979,0.0002570193,0.09450872,0.0004475222,0.0002287163,0.0005604622,0.0004421789,0.802547,0.04648007,0.005351241,0.001506725,0.04710579],"study_design_scores_gemma":[0.00002425617,0.00007889095,0.03086181,0.00001381254,0.00005773871,0.0001371108,0.000188718,0.9588105,0.003932965,0.00446521,0.001412047,0.00001690011],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9874169,0.0003299478,0.01073558,0.0001055842,0.00000461115,0.00001362976,0.0005518824,0.0002008014,0.0006410706],"genre_scores_gemma":[0.9848262,0.0002388261,0.01309562,0.00003308123,0.000006059626,0.00003067905,0.001490489,0.00007026872,0.0002086981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007417689,"threshold_uncertainty_score":0.01474899,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04254395801968929,"score_gpt":0.2615126920627316,"score_spread":0.2189687340430423,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}