{"id":"W2109485875","doi":"10.1093/molbev/msv021","title":"Divergent Mitochondrial Respiratory Chains in Phototrophic Relatives of Apicomplexan Parasites","year":2015,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Russian Academy of Sciences; Canadian Institutes of Health Research; King Abdullah University of Science and Technology; Russian Foundation for Basic Research; Canadian Institute for Advanced Research; Univerzita Komenského v Bratislave; Grantová Agentura České Republiky; Univerzita Karlova v Praze; Universiteit van Amsterdam; John Simon Guggenheim Memorial Foundation","keywords":"Biology; Mitochondrion; Mitochondrial DNA; Respiratory chain; Phototroph; Organelle; Electron transport chain; Gene; Genome; Endosymbiosis; Genetics; Evolutionary biology; Photosynthesis; Biochemistry; Chloroplast; Plastid","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001393906,0.00009944605,0.0001320923,0.00007255068,0.0000408029,0.000002572679,0.00009467172,0.0002005344,0.000004179524],"category_scores_gemma":[0.00009978652,0.0001001037,0.00004412376,0.00007952008,0.0002042066,0.00000364457,0.0001124805,0.00007675901,0.000003314079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001897343,"about_ca_system_score_gemma":0.0000521489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000746922,"about_ca_topic_score_gemma":0.00003980445,"domain_scores_codex":[0.9992161,0.0001888946,0.0001448289,0.0002453154,0.00005159004,0.00015324],"domain_scores_gemma":[0.9996626,0.000005769176,0.00006546533,0.0001495406,0.00005180469,0.00006482087],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002063103,0.00004335745,0.2565577,0.000006746895,0.00002593071,0.000003501913,0.00006961408,0.00005239451,0.7384382,0.004439113,0.00008418082,0.00007291944],"study_design_scores_gemma":[0.003295064,0.001900852,0.6813321,0.0000287318,0.00003976182,0.0000147596,0.0001863324,0.0001392371,0.2967456,0.01303304,0.002848515,0.0004359263],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905162,0.003115676,0.005743534,0.00004472028,0.0001325076,0.0001546426,0.0000250964,0.00000493262,0.0002626861],"genre_scores_gemma":[0.9992079,0.00003333563,0.0005176645,0.00006762926,0.0000549945,0.000008917517,0.00007014548,0.000004852914,0.00003456853],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4416925,"threshold_uncertainty_score":0.408211,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02069207375552312,"score_gpt":0.2774570852276378,"score_spread":0.2567650114721147,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}