{"id":"W2109488005","doi":"10.1093/nar/gkv350","title":"The BioMart community portal: an innovative alternative to large, centralized data repositories","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":840,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"RIKEN; Office of Science; Centre National de la Recherche Scientifique; Fundación Sandra Ibarra de Solidaridad Frente al Cáncer; Universitat Pompeu Fabra; King Abdulaziz University; Ministry of Science, ICT and Future Planning; Ministry of Education, Culture, Sports, Science and Technology; National Human Genome Research Institute; Wellcome Trust; Agence Nationale de la Recherche; National Research Foundation; Breast Cancer Campaign; European Molecular Biology Laboratory; National Research Foundation of Korea; U.S. Department of Energy","keywords":"Toolbox; Interface (matter); World Wide Web; Service (business); Computer science; Data science; Ontology; User interface; Database","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0173261,0.001959295,0.002839289,0.009330045,0.002822006,0.01286495,0.00866252,0.003003729,0.03725407],"category_scores_gemma":[0.03646284,0.001928239,0.002005849,0.01948509,0.001552123,0.01821295,0.01713958,0.004555895,0.04040598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001453566,"about_ca_system_score_gemma":0.007425811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004965257,"about_ca_topic_score_gemma":0.004534824,"domain_scores_codex":[0.9872468,0.00365375,0.001541581,0.001820644,0.004942543,0.0007946898],"domain_scores_gemma":[0.9616485,0.007154288,0.002093642,0.01784992,0.006006085,0.005247594],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001687025,0.0004613174,0.003777958,0.001333441,0.0004463449,0.0007166076,0.0008451571,0.001825052,0.005656762,0.05571806,0.6905413,0.236991],"study_design_scores_gemma":[0.0003749843,0.00009829274,0.001614054,0.0003650422,0.0001405239,0.0006247125,0.0002721551,0.01004869,0.004162586,0.04907368,0.9330423,0.0001830119],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.006078068,0.003861251,0.6137356,0.007786418,0.001632219,0.0008023738,0.04072383,0.2849956,0.04038465],"genre_scores_gemma":[0.05131324,0.004849305,0.6383384,0.004538457,0.001998353,0.001672978,0.2087451,0.05527917,0.03326492],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03725407,"threshold_uncertainty_score":0.1246273,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1966316446498229,"score_gpt":0.4495173086639728,"score_spread":0.2528856640141499,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}