{"id":"W2109945233","doi":"10.1128/jb.05136-11","title":"Transcriptional Profiling of the Iron Starvation Response in Bordetella pertussis Provides New Insights into Siderophore Utilization and Virulence Gene Expression","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"ECW Press (Canada)","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Bordetella pertussis; Biology; Virulence; Microbiology; Siderophore; Bordetella; Secretion; Ferrichrome; Gene; Bordetella bronchiseptica; Bacterial outer membrane; Bacteria; Genetics; Escherichia coli; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002788088,0.00009858233,0.0002277428,0.0001679175,0.00007856198,0.000005597051,0.0001055722,0.000188663,0.0001129152],"category_scores_gemma":[0.0001738062,0.0000619135,0.00005508884,0.0001083478,0.0001102917,0.0001971008,0.00003363731,0.0001848766,0.000001163931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002927226,"about_ca_system_score_gemma":0.0001382365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001140407,"about_ca_topic_score_gemma":0.00005026881,"domain_scores_codex":[0.9987895,0.0004752635,0.0004997529,0.0001158131,0.0000183674,0.0001013406],"domain_scores_gemma":[0.9992826,0.00009394823,0.0003823734,0.0001031971,0.0001207552,0.00001714958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002964363,0.00006735921,0.02392287,0.00001601032,0.00001686261,7.193407e-7,0.00222856,0.000005096781,0.9687474,0.0000733174,0.00001627623,0.001941156],"study_design_scores_gemma":[0.0006369837,0.0004940078,0.4430718,0.00007179383,0.00001561589,0.00007897995,0.0001678347,0.000004846675,0.5542075,0.0004380013,0.0007615181,0.00005117487],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971904,0.001562873,0.000349538,0.0001633651,0.0005956251,0.0001243386,0.000002466413,0.000003925842,0.000007514113],"genre_scores_gemma":[0.9983768,0.0005235909,0.0009889953,0.00002781354,0.0000391686,0.000002620374,0.000005044759,0.000006570953,0.00002935733],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4191489,"threshold_uncertainty_score":0.2524759,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03716770841723926,"score_gpt":0.2516090391598524,"score_spread":0.2144413307426131,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}