{"id":"W2109945233","doi":"10.1128/jb.05136-11","title":"Transcriptional Profiling of the Iron Starvation Response in Bordetella pertussis Provides New Insights into Siderophore Utilization and Virulence Gene Expression","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"ECW Press (Canada)","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Bordetella pertussis; Biology; Virulence; Microbiology; Siderophore; Bordetella; Secretion; Ferrichrome; Gene; Bordetella bronchiseptica; Bacterial outer membrane; Bacteria; Genetics; Escherichia coli; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001245291,0.0001959278,0.0003761144,0.0006903237,0.0002453278,0.0002925871,0.0001022244,0.0003111297,0.0007156511],"category_scores_gemma":[0.0001928467,0.0001559009,0.0002801105,0.0005498538,0.0002062322,0.0001257971,0.0001871091,0.0003726892,0.0002636681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002393078,"about_ca_system_score_gemma":0.0002321486,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00110967,"about_ca_topic_score_gemma":0.001926024,"domain_scores_codex":[0.9998474,0.00001572881,0.000008402195,0.00004617375,0.00004509734,0.00003722165],"domain_scores_gemma":[0.9998572,0.00003681728,0.00003413502,0.00001282639,0.00002722935,0.00003187991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001276053,0.00001313679,0.002674758,0.00003148141,0.000004941164,0.00003129187,0.00004017945,0.00002473359,0.9958766,0.00001583712,0.00002771114,0.00113172],"study_design_scores_gemma":[0.00001590959,0.0007593135,0.6830481,0.00002988247,0.00006879575,0.0006039025,0.0004947202,0.001780035,0.309938,0.000194753,0.003045105,0.00002151272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993883,0.001147667,0.001445959,0.0001131121,0.00001363104,0.00002306128,0.002658374,0.00004612948,0.000669102],"genre_scores_gemma":[0.9857707,0.001373079,0.003295003,0.0001323219,0.00003006843,0.00009656646,0.006658135,0.00002491463,0.00261927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00110967,"threshold_uncertainty_score":0.00239408,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03716770841723926,"score_gpt":0.2516090391598524,"score_spread":0.2144413307426131,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}