{"id":"W2110053230","doi":"10.1098/rstb.2013.0345","title":"Genomics of homoploid hybrid speciation: diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers","year":2014,"lang":"en","type":"article","venue":"Philosophical Transactions of the Royal Society B Biological Sciences","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Retrotransposon; Biology; Genetics; Long terminal repeat; Helianthus; Transposable element; Genome; Gene; Helianthus annuus; Evolutionary biology; Sunflower","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005379153,0.0001326796,0.0002934357,0.00001223153,0.0006471069,0.000009057865,0.0004381186,0.00009828125,0.0001415672],"category_scores_gemma":[0.00004297376,0.00005518488,0.0003696452,0.0003593398,0.001289761,0.00007514979,0.00007734317,0.0001969884,2.955092e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002888519,"about_ca_system_score_gemma":0.00001612953,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003963298,"about_ca_topic_score_gemma":0.0001211866,"domain_scores_codex":[0.9986577,0.0001605909,0.0003282943,0.0003251462,0.0003249619,0.0002033269],"domain_scores_gemma":[0.9993008,0.0003343914,0.0001622009,0.00007481415,0.0000548131,0.00007296034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003440288,0.002032767,0.6732354,0.00009800668,0.0001359069,0.000001805444,0.001004661,0.004590984,0.281436,0.006159513,0.00000684528,0.03095418],"study_design_scores_gemma":[0.0002629861,0.0005905849,0.967782,0.00003322642,0.00003787108,0.000007163853,0.00005577164,0.003520658,0.01312023,0.0144172,0.00002535388,0.0001469945],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948105,0.00006716805,0.0009462964,0.003537164,0.00008109614,0.0001778825,0.0002189052,0.00001146233,0.0001495859],"genre_scores_gemma":[0.9994156,0.0001004211,0.0003491854,0.00004409363,0.00007328796,0.000004027047,0.000004783024,6.181068e-7,0.000007955246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2945466,"threshold_uncertainty_score":0.4977089,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03460434496903979,"score_gpt":0.2161846543760231,"score_spread":0.1815803094069833,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}