{"id":"W2110053230","doi":"10.1098/rstb.2013.0345","title":"Genomics of homoploid hybrid speciation: diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers","year":2014,"lang":"en","type":"article","venue":"Philosophical Transactions of the Royal Society B Biological Sciences","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Retrotransposon; Biology; Genetics; Long terminal repeat; Helianthus; Transposable element; Genome; Gene; Helianthus annuus; Evolutionary biology; Sunflower","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001866117,0.0001584655,0.0002174716,0.000931068,0.000178433,0.0002068749,0.000129574,0.0002915076,0.0006142055],"category_scores_gemma":[0.0001733467,0.0001007907,0.0002353518,0.0004910502,0.0001653717,0.0002064552,0.000201819,0.0002204245,0.00008837983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002958815,"about_ca_system_score_gemma":0.0001099487,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006970675,"about_ca_topic_score_gemma":0.0009342515,"domain_scores_codex":[0.9999107,0.000009374564,0.00000728226,0.00004307063,0.00001810577,0.00001144463],"domain_scores_gemma":[0.9998379,0.00005053602,0.00005359652,0.00001089131,0.00001449796,0.00003245558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001296824,0.00001208332,0.01224665,0.00004613701,0.00002937837,0.00008989625,0.0002285432,0.0001278737,0.9818076,0.0001009301,0.00001081384,0.005170393],"study_design_scores_gemma":[0.00001042585,0.0001967987,0.9572162,0.0000102745,0.00005226935,0.0009214336,0.0002827964,0.0006471022,0.03934347,0.0003314639,0.0009720263,0.0000158561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986129,0.0003470644,0.0005483209,0.00001351901,0.000001024024,0.000003202935,0.0002464679,0.00001037673,0.0002171708],"genre_scores_gemma":[0.9978545,0.0002438781,0.0008338296,0.00002700492,0.000005094561,0.00000887298,0.0006535694,0.000009274616,0.000363843],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000931068,"threshold_uncertainty_score":0.00214678,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03460434496903979,"score_gpt":0.2161846543760231,"score_spread":0.1815803094069833,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}