{"id":"W2110085694","doi":"10.1128/jb.00809-06","title":"<i>Salmonella</i>Produces an O-Antigen Capsule Regulated by AgfD and Important for Environmental Persistence","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":201,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; University of Guelph","keywords":"Biology; Salmonella enterica; Operon; Bacterial capsule; Microbiology; Antigen; Extracellular; Salmonella; Fimbria; Pilus; Gene; Cell biology; Mutant; Bacteria; Escherichia coli; Biochemistry; Genetics; Virulence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008578499,0.0002137082,0.00009395388,0.0001048887,0.00008221483,0.000245644,0.00008259548,0.0001309265,0.000384844],"category_scores_gemma":[0.0001018972,0.00005297426,0.0001373706,0.00007931778,0.0001780554,0.0001330555,0.0001971869,0.000215975,0.0002083075],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002184773,"about_ca_system_score_gemma":0.0001712729,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009926107,"about_ca_topic_score_gemma":0.0009736796,"domain_scores_codex":[0.9999264,0.00001021127,0.000005222342,0.00001211864,0.00002228851,0.00002374023],"domain_scores_gemma":[0.9998906,0.00001599374,0.00003820758,0.00001430054,0.00002077776,0.00002015746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002412246,0.000007883315,0.001129792,0.00001476444,0.000001544069,0.00006653029,0.00001036584,0.00003096396,0.9979984,0.00006388553,0.00001906145,0.0006326308],"study_design_scores_gemma":[0.00000496922,0.0001566473,0.01679073,0.000002985483,0.000008767361,0.0006392936,0.00007118584,0.0006906959,0.9800349,0.00006267874,0.001532932,0.00000404051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968972,0.0002335397,0.00210912,0.00008418036,0.000009180671,0.000004941692,0.00008498643,0.0000389576,0.0005378433],"genre_scores_gemma":[0.9963621,0.0001469967,0.002522661,0.00003825608,0.000004618436,0.000004112442,0.0002885181,0.00001213578,0.0006206278],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009926107,"threshold_uncertainty_score":0.001973629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007568074831723963,"score_gpt":0.2085454567763943,"score_spread":0.2009773819446704,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}