{"id":"W2110105488","doi":"10.1093/hmg/ddh195","title":"Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes","year":2004,"lang":"en","type":"article","venue":"Human Molecular Genetics","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"Genome British Columbia; Genome Canada; Lymphoma Research Foundation","keywords":"Comparative genomic hybridization; Biology; Mantle cell lymphoma; Genome; Genetics; Copy number analysis; Copy-number variation; Gene expression profiling; Gene duplication; Microarray; Gene dosage; Computational biology; Lymphoma; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003480032,0.0002540004,0.0003982338,0.00011,0.00008833235,0.00001793572,0.0001320656,0.0001047074,0.00001760405],"category_scores_gemma":[0.000002572915,0.0002395216,0.0001993311,0.0001105265,0.0001022665,0.00001835301,0.00006415437,0.00005229627,0.00005408324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001858004,"about_ca_system_score_gemma":0.0001885843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000184949,"about_ca_topic_score_gemma":0.000001874084,"domain_scores_codex":[0.9986095,0.00002005673,0.0003564758,0.0003610564,0.0003313004,0.0003216336],"domain_scores_gemma":[0.9989772,0.000008603251,0.0001277843,0.0005549752,0.0001691573,0.0001622773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002205733,0.001044959,0.001548875,0.0001694384,0.0001367879,0.0002025621,0.0004008133,0.01803911,0.9773157,0.0006773324,0.00001232275,0.0004300969],"study_design_scores_gemma":[0.006956436,0.000609386,0.02395594,0.00006763389,0.0003368352,0.0000458233,0.0001575597,0.0004411189,0.9641171,0.001883464,0.00113217,0.000296609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9834907,0.008863298,0.003573734,0.00008230627,0.00003368273,0.000569283,0.00004161719,0.00003693977,0.003308405],"genre_scores_gemma":[0.9702513,0.0002827238,0.02867242,0.0003505189,0.00004261734,0.00003639923,0.0001577561,0.0000556962,0.0001506034],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02509869,"threshold_uncertainty_score":0.9767409,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02282231987765972,"score_gpt":0.2647866558073722,"score_spread":0.2419643359297124,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}