{"id":"W2110298493","doi":"10.1093/jac/dkr226","title":"Phylogenetic diversity of Escherichia coli strains producing NDM-type carbapenemases","year":2011,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Escherichia coli; Biology; Phylogenetic tree; Microbiology; Phylogenetic diversity; Enterobacteriaceae; Phylogenetics; Multilocus sequence typing; Genetic diversity; Genetics; Genotype; Gene; Medicine; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002830442,0.0002220801,0.0002049449,0.001242401,0.0003846832,0.0004414593,0.0001779686,0.0003339117,0.0008426849],"category_scores_gemma":[0.0008874886,0.0001427178,0.0001150183,0.0007037487,0.0002702299,0.0002401164,0.0003201762,0.0001832774,0.000214738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002787141,"about_ca_system_score_gemma":0.0001656141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002193768,"about_ca_topic_score_gemma":0.002329367,"domain_scores_codex":[0.9996576,0.00005463917,0.00004296276,0.0001062619,0.00005334303,0.00008509799],"domain_scores_gemma":[0.9992067,0.000247005,0.0002337832,0.00003738052,0.0001425287,0.0001325071],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000352887,0.00006990865,0.9663962,0.00003940794,0.00003463816,0.0003622304,0.0006395906,0.0001455123,0.02566686,0.00004254327,0.00007127293,0.006178918],"study_design_scores_gemma":[0.0000160246,0.0002500049,0.9941522,0.00001998381,0.00002119488,0.001967328,0.0005741789,0.0002628162,0.002172636,0.00004778508,0.0005093387,0.000006333824],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996272,0.0000627121,0.00006052507,0.000007215045,6.29991e-7,0.000004297044,0.00005936318,9.807169e-7,0.0001770488],"genre_scores_gemma":[0.999388,0.00006826239,0.0002088018,0.0000121966,0.000001947966,0.00000390398,0.0002273762,8.087077e-7,0.00008873959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002193768,"threshold_uncertainty_score":0.004361987,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01918252764803574,"score_gpt":0.2359886950477295,"score_spread":0.2168061673996938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}