{"id":"W2110501975","doi":"10.1093/molbev/msp081","title":"Evolution of Ultrasmall Spliceosomal Introns in Highly Reduced Nuclear Genomes","year":2009,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Intron; Biology; RNA splicing; Group II intron; Minor spliceosome; Group I catalytic intron; Genome; Genetics; Evolutionary biology; Gene; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001244947,0.0001160135,0.0001431797,0.00009136138,0.00006240793,0.000004090823,0.0001197543,0.0002633533,0.000005168089],"category_scores_gemma":[0.0000363448,0.0001245011,0.00005668891,0.0001050409,0.0001375999,0.00000499123,0.00005146155,0.00009237491,0.000004448723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003684575,"about_ca_system_score_gemma":0.0000399823,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006550648,"about_ca_topic_score_gemma":0.00002090805,"domain_scores_codex":[0.9991959,0.0001000005,0.000163739,0.0002883963,0.00004233885,0.0002096382],"domain_scores_gemma":[0.9996654,0.000004259125,0.00006752353,0.0001757909,0.00003935337,0.0000476728],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001654766,0.00006653647,0.04687736,0.000007145195,0.00001832302,0.000002544616,0.00002988326,0.00004629308,0.9307824,0.02127781,0.00003858372,0.0006876941],"study_design_scores_gemma":[0.00113994,0.00126272,0.8591784,0.00001832756,0.00003517553,0.00003426834,0.0000835316,0.0001531182,0.1255089,0.01148258,0.000803576,0.0002995329],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934551,0.002466082,0.003129434,0.0002181289,0.00006133511,0.0001485778,0.00001928917,0.000009617283,0.0004924589],"genre_scores_gemma":[0.9989656,0.0001037242,0.0006678685,0.0001047707,0.0000496642,0.000002728373,0.00007624192,0.000005499542,0.0000238748],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.812301,"threshold_uncertainty_score":0.5077007,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003936885881437638,"score_gpt":0.2160128257579209,"score_spread":0.2120759398764832,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}