{"id":"W2110786038","doi":"10.1128/genomea.01165-13","title":"Complete Genome Sequence of <i>Hyphomicrobium nitrativorans</i> Strain NL23, a Denitrifying Bacterium Isolated from Biofilm of a Methanol-Fed Denitrification System Treating Seawater at the Montreal Biodome","year":2014,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Universitaire Stichting","keywords":"Denitrifying bacteria; Biofilm; Strain (injury); Bacteria; Whole genome sequencing; Microbiology; Denitrification; Biology; Seawater; Methanol; Aerobic denitrification; Genome; Chemistry; Biochemistry; Gene; Ecology; Nitrogen; Genetics; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003860441,0.001087474,0.0009303069,0.001654788,0.0008238009,0.0008157767,0.0007564162,0.0009349234,0.003758858],"category_scores_gemma":[0.0009632321,0.0003957093,0.0009243807,0.003098763,0.0003203789,0.000535686,0.0005150469,0.001363486,0.002960791],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000801002,"about_ca_system_score_gemma":0.003457147,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03230659,"about_ca_topic_score_gemma":0.02086111,"domain_scores_codex":[0.9997808,0.00002311463,0.000021224,0.000052229,0.00008403724,0.00003863463],"domain_scores_gemma":[0.9993367,0.0001214981,0.0001824263,0.00004838221,0.0001716476,0.0001393994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00204909,0.0002456504,0.006075457,0.002547955,0.0001498953,0.0008691555,0.0006539937,0.001465089,0.9344491,0.0008653877,0.01633673,0.0342924],"study_design_scores_gemma":[0.0005769278,0.001287166,0.3784878,0.0005749225,0.001202594,0.002837302,0.001344631,0.004842335,0.1778816,0.001497682,0.4290859,0.0003810584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3683457,0.007299673,0.01809713,0.001621113,0.0005214292,0.0004833938,0.592611,0.001468584,0.009551999],"genre_scores_gemma":[0.1033103,0.00316505,0.02309155,0.0002391231,0.00009134327,0.0003047371,0.8638161,0.0003542714,0.005627638],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9676934,"threshold_uncertainty_score":0.06423706,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0221027216973334,"score_gpt":0.2158323197108514,"score_spread":0.193729598013518,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}