{"id":"W2110865847","doi":"10.1086/597586","title":"Incidence and Treatment Outcomes of Pharyngeal <i>Neisseria gonorrhoeae</i> and <i>Chlamydia trachomatis</i> Infections in Men Who Have Sex with Men: A 13‐Year Retrospective Cohort Study","year":2009,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; McMaster University; Hamilton Regional Laboratory Medicine Program; Hassle Free Clinic; Ministry of Health and Long Term Care; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Neisseria gonorrhoeae; Chlamydia trachomatis; Medicine; Incidence (geometry); Chlamydia; Retrospective cohort study; Gonorrhea; Chlamydiales; Azithromycin; Men who have sex with men; Cohort study; Cohort; Sexually transmitted disease; Chlamydiaceae; Neisseriaceae; Internal medicine; Gynecology; Microbiology; Antibiotics; Immunology; Syphilis; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006429698,0.0003620587,0.00112037,0.0002948324,0.0002614968,0.00005266742,0.0001131444,0.0002028641,0.00008482714],"category_scores_gemma":[0.0007636897,0.0002813628,0.0001166752,0.0003943892,0.0007625075,0.0003351203,0.00007715409,0.0004943343,0.00001793085],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001997323,"about_ca_system_score_gemma":0.0001581904,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001592265,"about_ca_topic_score_gemma":0.001640545,"domain_scores_codex":[0.9970656,0.0007965168,0.0007570498,0.0009169916,0.00007012588,0.000393713],"domain_scores_gemma":[0.9979149,0.0009508673,0.0002511895,0.0005582932,0.000200585,0.0001241741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002286331,0.006907362,0.986509,0.00001112197,0.0007452148,0.000009389756,0.0003873719,0.00001828644,0.0002812248,0.00006081907,0.0002804301,0.004561147],"study_design_scores_gemma":[0.005020043,0.006404146,0.9868357,0.00002685216,0.0003364959,0.0000554029,0.0005547748,0.00001953987,0.0001422646,0.0002902895,0.00004990129,0.0002645849],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916108,0.000576118,0.0000184734,0.0001021771,0.00006738594,0.002094261,0.00007211589,0.0001137096,0.005344919],"genre_scores_gemma":[0.9979665,0.0008307431,0.000004538158,0.00004503165,0.00004453992,0.0002735286,0.00002312597,0.00002358141,0.0007884285],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006355643,"threshold_uncertainty_score":0.9999639,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01605674222246921,"score_gpt":0.3389545766523441,"score_spread":0.3228978344298749,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}