{"id":"W2111009488","doi":"10.1504/ijbra.2014.062993","title":"Effects of rooting via out-groups on in-group topology in phylogeny","year":2014,"lang":"en","type":"article","venue":"International Journal of Bioinformatics Research and Applications","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Group (periodic table); Phylogenetic tree; Topology (electrical circuits); Mathematics; Set (abstract data type); Outlier; Class (philosophy); Computer science; Combinatorics; Artificial intelligence; Biology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000583966,0.00006062128,0.0001209377,0.0002559425,0.00002852087,0.00001389173,0.0002516448,0.00005403922,0.000001065429],"category_scores_gemma":[0.0001444003,0.00005299614,0.00003343096,0.00007932349,0.0001095019,0.000002690238,0.0001118919,0.0001416282,0.000001830766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001903836,"about_ca_system_score_gemma":0.00002675992,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001181296,"about_ca_topic_score_gemma":0.00006793627,"domain_scores_codex":[0.9991641,0.00004238419,0.0003786664,0.00007320588,0.0002063426,0.0001353218],"domain_scores_gemma":[0.9993157,0.0001588635,0.000149704,0.00008828329,0.0002426579,0.00004482188],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003666048,0.0007939475,0.03279808,0.0001759486,0.0002065101,0.000005548828,0.001126269,0.0006045459,0.794166,0.02423765,0.000220002,0.1452988],"study_design_scores_gemma":[0.01021172,0.00711261,0.4711494,0.000500205,0.00003073944,0.0001623688,0.002320824,0.008732161,0.3797364,0.05928275,0.06002581,0.0007349952],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9854817,0.0003574312,0.01232918,0.0002630856,0.0000804564,0.0001881346,0.000005761509,4.608265e-7,0.001293734],"genre_scores_gemma":[0.9975939,0.0005795569,0.001569696,0.00005971306,0.0001532395,0.00001963455,0.000005173878,0.000004305417,0.00001472572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4383513,"threshold_uncertainty_score":0.216112,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0152502355092867,"score_gpt":0.3230435583843513,"score_spread":0.3077933228750647,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}