{"id":"W2111095712","doi":"10.1016/j.actatropica.2013.06.012","title":"Novel genetic diversity within Anopheles punctimacula s.l.: Phylogenetic discrepancy between the Barcode cytochrome c oxidase I (COI) gene and the rDNA second internal transcribed spacer (ITS2)","year":2013,"lang":"en","type":"article","venue":"Acta Tropica","topic":"Malaria Research and Control","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Smithsonian Tropical Research Institute; Secretaría Nacional de Ciencia, Tecnología e Innovación; California Health Care Safety Net Institute; National Institutes of Health; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biology; Paraphyly; Internal transcribed spacer; Phylogenetic tree; Evolutionary biology; DNA barcoding; Molecular phylogenetics; Species complex; Phylogenetics; Genetics; Genetic diversity; Mitochondrial DNA; Clade; Gene; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001814382,0.0002848426,0.0004731503,0.00006481369,0.0004306616,0.0001339977,0.0004143536,0.0001038362,0.001430723],"category_scores_gemma":[0.0001291884,0.0001450319,0.0001925001,0.0001349953,0.0006153241,0.0001074323,0.0003354929,0.0004955047,0.00004157302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004503666,"about_ca_system_score_gemma":0.00009051739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001560006,"about_ca_topic_score_gemma":0.0002811958,"domain_scores_codex":[0.9980252,0.0002003041,0.0003203504,0.0004301962,0.0005002033,0.0005236989],"domain_scores_gemma":[0.9985498,0.0002681394,0.0001024996,0.0006311369,0.0001153293,0.0003330854],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002397384,0.0003497289,0.1117713,0.000216819,0.00215851,0.0001094822,0.003023751,0.000007303339,0.8689255,0.000722823,0.001489905,0.008827504],"study_design_scores_gemma":[0.008626118,0.0003679761,0.9844298,0.00003561057,0.0004092024,0.0001019455,0.0001940674,0.001210526,0.003310011,0.0005268347,0.0005921086,0.0001957695],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9779192,0.0006759418,0.001963198,0.01735311,0.00006368641,0.001527067,0.00006331439,0.0000348004,0.0003997076],"genre_scores_gemma":[0.9962192,0.00008890141,0.001079752,0.0007645918,0.0003494484,0.0001150845,0.00001411027,0.00002959422,0.001339359],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8726585,"threshold_uncertainty_score":0.9994821,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01529373470729013,"score_gpt":0.2300783025817832,"score_spread":0.2147845678744931,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}