{"id":"W2111128889","doi":"10.1006/geno.2001.6531","title":"Influence of Intercodon and Base Frequencies on Codon Usage in Filarial Parasites","year":2001,"lang":"en","type":"article","venue":"Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Biology; Brugia malayi; Onchocerca volvulus; Codon usage bias; Genetics; Gene; Nucleic acid sequence; Filarioidea; Sequence analysis; Wuchereria bancrofti; Parasite hosting; Filariasis; Helminths; Zoology; Onchocerciasis; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001183633,0.0001059522,0.0001332103,0.00004112023,0.00003038147,0.000008405002,0.0001030989,0.00007329944,0.000003099853],"category_scores_gemma":[0.00006298404,0.0001044116,0.00002913117,0.00004370745,0.00008699253,8.007332e-7,0.00009180178,0.00004915433,0.000001945331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000110049,"about_ca_system_score_gemma":0.00003221899,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009679194,"about_ca_topic_score_gemma":0.0002745715,"domain_scores_codex":[0.9994069,0.00002492034,0.0001747931,0.0002071088,0.00004268665,0.000143584],"domain_scores_gemma":[0.9996797,0.00002089809,0.00005545952,0.0001803404,0.00003093413,0.00003264548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001130331,0.00002805095,0.08556049,0.00000850985,0.00001726607,0.000003791421,0.0002029849,0.002312684,0.9108165,0.00008645651,0.00004022591,0.000810039],"study_design_scores_gemma":[0.001224864,0.0008557236,0.5647476,0.000035873,0.00002008838,0.00002324177,0.0002922183,0.0001122782,0.4173238,0.0008321433,0.01416557,0.0003665256],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984769,0.000856543,0.00001910181,0.00006065073,0.00004248065,0.0001019908,0.00003127141,0.000001280836,0.0004097858],"genre_scores_gemma":[0.9975293,0.001747629,0.0003880548,0.0001906331,0.00006147012,0.000006137548,0.00001060864,0.000009723984,0.00005638942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4934926,"threshold_uncertainty_score":0.4257782,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01224166861099672,"score_gpt":0.2316910091103052,"score_spread":0.2194493404993085,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}