{"id":"W2111128889","doi":"10.1006/geno.2001.6531","title":"Influence of Intercodon and Base Frequencies on Codon Usage in Filarial Parasites","year":2001,"lang":"en","type":"article","venue":"Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Biology; Brugia malayi; Onchocerca volvulus; Codon usage bias; Genetics; Gene; Nucleic acid sequence; Filarioidea; Sequence analysis; Wuchereria bancrofti; Parasite hosting; Filariasis; Helminths; Zoology; Onchocerciasis; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005490831,0.0002993414,0.0005237969,0.0007624516,0.0006732072,0.0008011837,0.000248064,0.0003529564,0.001655733],"category_scores_gemma":[0.0009227181,0.0001918199,0.0002957935,0.0005084821,0.0005481497,0.0002911685,0.0003618106,0.0007468559,0.0003888795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002735245,"about_ca_system_score_gemma":0.0002677091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007149415,"about_ca_topic_score_gemma":0.001499961,"domain_scores_codex":[0.9996355,0.0001273802,0.00003485643,0.00006239852,0.00007575884,0.0000640606],"domain_scores_gemma":[0.9986677,0.0005779698,0.0001957445,0.00008744008,0.0001470513,0.0003240794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001422468,0.00006090814,0.01023989,0.0000611309,0.00005465366,0.0003015009,0.0001026201,0.0005778376,0.9819073,0.0004202894,0.00005501112,0.004796444],"study_design_scores_gemma":[0.0001385244,0.001670805,0.3367301,0.00007616014,0.0005002539,0.002294874,0.000939524,0.01491084,0.6373702,0.001399678,0.003830066,0.0001390305],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991283,0.0001612932,0.0003408339,0.00001602861,0.000007218709,0.000002387514,0.00004931719,0.00001002134,0.0002845665],"genre_scores_gemma":[0.9992674,0.00008308601,0.0003734936,0.0000197501,0.000007411204,0.000003405581,0.00009471668,0.00001787161,0.0001327799],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001655733,"threshold_uncertainty_score":0.00553894,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01224166861099672,"score_gpt":0.2316910091103052,"score_spread":0.2194493404993085,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}