{"id":"W2111282720","doi":"10.1128/iai.05118-11","title":"Fusobacterium nucleatum Infection of Colonic Cells Stimulates MUC2 Mucin and Tumor Necrosis Factor Alpha","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; University of Guelph; University of Calgary","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; University of Calgary","keywords":"Fusobacterium nucleatum; Mucin 2; Mucin; Biology; Microbiology; Tumor necrosis factor alpha; Inflammatory bowel disease; Pathogenesis; Pathogen; Secretion; Immunology; Pathology; Disease; Gene expression; Bacteria; Gene; Medicine; Porphyromonas gingivalis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001744923,0.0001545772,0.0002903657,0.0001884837,0.0001462012,0.00003312963,0.0000299208,0.0001021562,0.0009164588],"category_scores_gemma":[0.0002339623,0.0001363001,0.00007214514,0.0001871519,0.0001560626,0.0002281836,0.00008503906,0.0002803375,0.0000221956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007194346,"about_ca_system_score_gemma":0.0000812477,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01834567,"about_ca_topic_score_gemma":0.0002645736,"domain_scores_codex":[0.9991289,0.0001100377,0.0002419465,0.0001770925,0.0001175737,0.0002244377],"domain_scores_gemma":[0.9991914,0.0001156955,0.0001042785,0.0002161901,0.0001691042,0.0002033469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003829975,0.0004836484,0.7473066,0.0002773987,0.00007769248,0.000004285373,0.0008886866,1.296514e-7,0.2468621,0.00002637276,0.0002963094,0.003393704],"study_design_scores_gemma":[0.001041866,0.001295822,0.8545778,0.0000729856,0.00005468981,0.00003455642,0.00002221351,0.00005362333,0.1409142,0.00005997775,0.001765359,0.0001069121],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978101,0.00006462778,0.00001137019,0.00003196365,0.0002431964,0.000382607,0.00002468159,0.00007201534,0.001359457],"genre_scores_gemma":[0.9985256,0.001084447,0.00007816328,0.0001013095,0.00003513792,0.00002699317,0.000009951863,0.00001707571,0.0001213836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1072712,"threshold_uncertainty_score":0.9999968,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03831261460849238,"score_gpt":0.2768431336886978,"score_spread":0.2385305190802054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}