{"id":"W2111327312","doi":"10.1534/genetics.104.037887","title":"A Unified Model of Codon Reassignment in Alternative Genetic Codes","year":2005,"lang":"en","type":"article","venue":"Genetics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Transfer RNA; Genetic code; Biology; Genetics; Genome; Selection (genetic algorithm); Mutation; Function (biology); Codon usage bias; Computational biology; Gene; RNA; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001352674,0.0006268916,0.001497376,0.001439649,0.001704608,0.002802151,0.002901374,0.003596611,0.006133198],"category_scores_gemma":[0.003758223,0.0006236608,0.001786359,0.001105062,0.003066035,0.004040748,0.001562342,0.001837562,0.001109732],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002399272,"about_ca_system_score_gemma":0.001621741,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003691988,"about_ca_topic_score_gemma":0.001814207,"domain_scores_codex":[0.9991412,0.000232773,0.00004059053,0.0001527315,0.0002354142,0.000197247],"domain_scores_gemma":[0.9984022,0.0006299546,0.0001830241,0.000257737,0.0002211447,0.0003058999],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001769259,0.0001160849,0.001453263,0.00008528044,0.00004681083,0.0007479711,0.0004038277,0.5349647,0.01150029,0.4431024,0.00105225,0.006350188],"study_design_scores_gemma":[0.0001560645,0.0001103591,0.0003894256,0.00001528025,0.00002399516,0.000255505,0.00008298481,0.8410168,0.0009595071,0.1547349,0.0021992,0.00005599713],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6591148,0.001184503,0.2985209,0.002497238,0.0002800382,0.0002196355,0.0003787839,0.0007584334,0.03704569],"genre_scores_gemma":[0.9586384,0.000600112,0.02777796,0.0002109832,0.00007642989,0.0002548353,0.0001393053,0.0001608149,0.01214109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006133198,"threshold_uncertainty_score":0.02051759,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0210548729574947,"score_gpt":0.2505766397134398,"score_spread":0.2295217667559451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}