{"id":"W2111615726","doi":"10.1128/jb.186.7.2179-2194.2004","title":"Reconstruction of the Central Carbohydrate Metabolism of <i>Thermoproteus tenax</i> by Use of Genomic and Biochemical Data","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Genome Prairie; Deutsche Forschungsgemeinschaft","keywords":"Biology; Tenax; Pentose phosphate pathway; Biochemistry; Metabolic pathway; Citric acid cycle; Genome; Phosphogluconate dehydrogenase; Genetics; Gene; Metabolism; Dehydrogenase; Enzyme; Glycolysis; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009576877,0.0007644624,0.0003056673,0.0009607848,0.0002317264,0.0004243434,0.0002448976,0.0002893862,0.0007914625],"category_scores_gemma":[0.0002478713,0.0001933562,0.0005196948,0.001136386,0.0001229511,0.0002158045,0.0002850004,0.0002657733,0.0003436199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002428461,"about_ca_system_score_gemma":0.0003955512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002556193,"about_ca_topic_score_gemma":0.001538786,"domain_scores_codex":[0.9999497,0.000006253547,0.000005193944,0.00001755203,0.0000112375,0.00001002437],"domain_scores_gemma":[0.9998503,0.00002862488,0.00004085181,0.0000133621,0.00003280166,0.00003401468],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006670998,0.00004455725,0.00653752,0.0003243435,0.00004252579,0.0003662734,0.0001155604,0.00228889,0.9781647,0.0001084679,0.000109473,0.01123051],"study_design_scores_gemma":[0.0001158391,0.00164849,0.5765381,0.0002936618,0.0006102538,0.004280231,0.001256646,0.03858069,0.3458329,0.001802627,0.02891002,0.0001305045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9838622,0.000551109,0.005376653,0.00006201058,0.00001021691,0.00003996086,0.008706337,0.0002094512,0.001182069],"genre_scores_gemma":[0.9362168,0.001064985,0.01911294,0.0000551976,0.000008969992,0.00008957636,0.04227134,0.00009451895,0.001085762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002556193,"threshold_uncertainty_score":0.005082667,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01392294346919638,"score_gpt":0.2117815430417476,"score_spread":0.1978585995725512,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}