{"id":"W2111644555","doi":"10.1152/physiolgenomics.00153.2004","title":"DNA microarray analysis of gene expression in alveolar epithelial cells in response to TNFα, LPS, and cyclic stretch","year":2004,"lang":"en","type":"article","venue":"Physiological Genomics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":147,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network; St. Michael's Hospital","funders":"","keywords":"Biology; Proinflammatory cytokine; Tumor necrosis factor alpha; Gene expression; Signal transduction; Chemokine; Cell biology; Microarray analysis techniques; Inflammation; Molecular biology; Immunology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005143805,0.0001695491,0.0005083175,0.0004415671,0.00004778614,0.000006983047,0.0001903715,0.0002773049,0.00007304631],"category_scores_gemma":[0.0001250293,0.0001403268,0.0001131402,0.0004789125,0.00011446,0.00005577717,0.0001132928,0.0002084502,0.000056494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001020911,"about_ca_system_score_gemma":0.00004891675,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001069877,"about_ca_topic_score_gemma":0.00003585574,"domain_scores_codex":[0.9983494,0.0004801908,0.0004876132,0.0003505479,0.00002886633,0.0003033324],"domain_scores_gemma":[0.9993696,0.0001884699,0.0001221874,0.0002661745,0.0000273414,0.00002618747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003577938,0.0001522861,0.0004703879,0.000005162712,0.00008321107,0.000004939824,0.001258122,0.003815914,0.9899278,0.0000227757,0.00000836766,0.0006730934],"study_design_scores_gemma":[0.001003323,0.0002181608,0.1954034,0.00001464118,0.00003626107,0.000001387266,0.0001753424,0.00001279128,0.8024282,0.0001852801,0.0003880727,0.0001330784],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988457,0.0005289508,0.0001128157,0.0001329206,0.00007274826,0.0002368102,0.00004618861,0.00001295078,0.00001092567],"genre_scores_gemma":[0.9988807,0.0002376901,0.0006173665,0.0001173212,0.0000107122,0.00001646404,0.00008045667,0.000008312969,0.00003092761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.194933,"threshold_uncertainty_score":0.5722361,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01172016866316629,"score_gpt":0.2346918942457106,"score_spread":0.2229717255825443,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}