{"id":"W2111831637","doi":"10.1139/g05-043","title":"Phylogenetic relationships among<i>Secale</i>species revealed by amplified fragment length polymorphisms","year":2005,"lang":"en","type":"article","venue":"Genome","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Division of Undergraduate Education","keywords":"Secale; Biology; Amplified fragment length polymorphism; Subspecies; Phylogenetic tree; Evolutionary biology; Botany; Genetics; Zoology; Genetic diversity; Population; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001323104,0.0001879319,0.0001466172,0.00004777183,0.0002357992,0.00003506803,0.0002451633,0.0002164617,0.0004273345],"category_scores_gemma":[0.00002520525,0.0001965362,0.00009051924,0.0001028342,0.00009922399,0.000004910076,0.0001098441,0.0001374187,0.0001186824],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002528604,"about_ca_system_score_gemma":0.00002788379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001292026,"about_ca_topic_score_gemma":0.00004267462,"domain_scores_codex":[0.9988288,0.00008282398,0.0002367272,0.0003793021,0.0001912574,0.0002810931],"domain_scores_gemma":[0.999276,0.000009565316,0.0001016818,0.000414351,0.00005649515,0.0001418862],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005721885,0.00007039398,0.09311146,0.00001170871,0.00009857018,0.000001814946,0.0003576457,0.001673831,0.8865325,0.0002118854,0.01686631,0.001006642],"study_design_scores_gemma":[0.000566853,0.00008536069,0.5337653,0.000003592046,0.00003309975,0.000007347037,0.0001040619,0.00001032512,0.0149061,0.00008729195,0.450129,0.000301577],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918251,0.002347427,0.001542875,0.0004608681,0.0001232172,0.0002257001,0.0001500932,0.00002311333,0.003301629],"genre_scores_gemma":[0.9826834,0.0002284912,0.001455255,0.000494295,0.000379697,0.00001098423,0.0006448101,0.00001954361,0.01408357],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8716264,"threshold_uncertainty_score":0.8014513,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01781870337531287,"score_gpt":0.2071133543255311,"score_spread":0.1892946509502183,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}