{"id":"W2111996375","doi":"10.1128/jcm.02366-06","title":"Use of Sequence Analysis of the NS5B Region for Routine Genotyping of Hepatitis C Virus with Reference to C/E1 and 5′ Untranslated Region Sequences","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":286,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hôpital du Sacré-Cœur de Montréal; Hôpital Maisonneuve-Rosemont; Jewish General Hospital; Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal; Royal Victoria Hospital; Institut National de Santé Publique du Québec","funders":"","keywords":"NS5B; Genotype; Genotyping; Biology; Virology; Untranslated region; Phylogenetic tree; Hepatitis C virus; Genetics; Sequence analysis; Five prime untranslated region; Hepacivirus; Virus; RNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001999656,0.0001138026,0.001155082,0.0003642205,0.0000315212,0.000004181289,0.0002123118,0.0002365712,0.000009713625],"category_scores_gemma":[0.002240787,0.00006888855,0.0002718596,0.0007871103,0.0006773915,0.00007313807,0.0000455855,0.0003909566,2.224908e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000380639,"about_ca_system_score_gemma":0.0003148705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00116955,"about_ca_topic_score_gemma":0.002960417,"domain_scores_codex":[0.9972302,0.0003300364,0.001857742,0.0002037753,0.0001417969,0.0002364237],"domain_scores_gemma":[0.9951975,0.001855765,0.001370144,0.0002859926,0.0011488,0.0001417551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003745226,0.0001128384,0.6431678,0.00008938828,0.0009359634,0.00003503741,0.0001518744,0.00006972205,0.3396063,0.00009824368,0.00005269877,0.01193484],"study_design_scores_gemma":[0.002843281,0.007527917,0.8835304,0.001242189,0.002047513,0.0004516716,0.00005684666,0.0002692439,0.09713306,0.00009170326,0.004625664,0.0001804636],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926472,0.0002045764,0.005613651,0.001074053,0.00005233461,0.0003205027,0.00005493376,0.00000260984,0.00003014352],"genre_scores_gemma":[0.9928737,0.001580786,0.005172489,0.0002906582,0.00003478459,0.000001047249,0.000007380786,0.000009605769,0.00002950343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2424733,"threshold_uncertainty_score":0.2809193,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2540727936695885,"score_gpt":0.445895801991301,"score_spread":0.1918230083217125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}