{"id":"W2112014780","doi":"10.1128/mmbr.00038-13","title":"The Singular Quest for a Universal Tree of Life","year":2013,"lang":"en","type":"article","venue":"Microbiology and Molecular Biology Reviews","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Social Sciences and Humanities Research Council of Canada; Swedish Foundation for International Cooperation in Research and Higher Education; Georgia Institute of Technology","keywords":"Tree of life (biology); Biology; Three-domain system; Prokaryote; Evolutionary biology; Biological evolution; Archaea; Genetics; Epistemology; Phylogenetics; Gene; Philosophy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005106258,0.0001896312,0.0003525929,0.00002726701,0.0001472277,0.00001012681,0.0002587028,0.0003068953,0.00001398175],"category_scores_gemma":[0.0003428773,0.0001230765,0.0001748564,0.00004311161,0.0004079209,0.000002508759,0.0001085793,0.00006258908,0.00001228871],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003744476,"about_ca_system_score_gemma":0.00004766559,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000124129,"about_ca_topic_score_gemma":0.00001623287,"domain_scores_codex":[0.9986299,0.0003741261,0.0003484428,0.0003510962,0.0000125129,0.0002839152],"domain_scores_gemma":[0.9992303,0.00005934731,0.0001971422,0.0003612035,0.00008545721,0.00006661208],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005105717,0.00001543575,0.0001645517,0.00002657926,0.00007296383,2.154694e-7,0.000008566259,9.03053e-8,0.9752526,0.003577502,0.001396324,0.01943413],"study_design_scores_gemma":[0.0004002908,0.0004634097,0.00003682745,0.00001711713,0.00003407335,0.00001992242,0.00001720485,0.000002124535,0.488756,0.001323307,0.5087708,0.0001589102],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.699192,0.2128678,0.08167191,0.00181349,0.0004418523,0.003287592,0.00005900752,0.00001962289,0.0006466277],"genre_scores_gemma":[0.9624532,0.01772097,0.01492822,0.00263395,0.0001945861,0.0006568099,0.0004007493,0.00005412583,0.0009574162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5073745,"threshold_uncertainty_score":0.5018916,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009891550359482137,"score_gpt":0.2443454229199791,"score_spread":0.234453872560497,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}