{"id":"W2112295728","doi":"10.1534/g3.113.009597","title":"Extensive Cotransformation of Natural Variation into Chromosomes of Naturally Competent <i>Haemophilus influenzae</i>","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"National Institutes of Health; Canadian Institutes of Health Research; Genome British Columbia; Canada's Michael Smith Genome Sciences Centre","keywords":"Biology; Genetics; Homologous recombination; Recombination; Genetic recombination; Gene conversion; Haemophilus influenzae; Gene; Population; Genome; DNA; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001875843,0.0002667453,0.0003796087,0.000123153,0.00006838652,0.00001546935,0.0003958187,0.0003720092,0.000008956471],"category_scores_gemma":[0.0000163715,0.0002532701,0.0001559396,0.0001890423,0.0002321411,0.000005990341,0.0001851564,0.0001125999,0.000004464554],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000180917,"about_ca_system_score_gemma":0.0000921031,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001912339,"about_ca_topic_score_gemma":0.00003925624,"domain_scores_codex":[0.9983841,0.0000873582,0.0006418714,0.0003705211,0.0002304389,0.0002857164],"domain_scores_gemma":[0.9984249,0.00001818961,0.0004009317,0.0005717052,0.0005161707,0.0000681051],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007589526,0.00004149459,0.0005219972,0.00009310227,0.0000867928,2.639444e-7,0.0001636527,0.000884322,0.8238924,0.0001997678,0.0000258554,0.1740145],"study_design_scores_gemma":[0.0007876483,0.0008145712,0.005280655,0.00001901468,0.00006553901,0.00001785856,0.00005421968,0.0007037068,0.9317666,0.0004879403,0.05969573,0.0003065124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.900555,0.09556731,0.002597604,0.0001553283,0.0006030041,0.0003409618,0.00004336121,0.00001728286,0.000120183],"genre_scores_gemma":[0.9635182,0.02708305,0.008618874,0.0002041955,0.000249326,0.00001022118,0.0002519657,0.00003055648,0.00003361556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.173708,"threshold_uncertainty_score":0.999992,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005300973584444003,"score_gpt":0.2146498500016255,"score_spread":0.2093488764171815,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}