{"id":"W2112456433","doi":"10.1016/j.sbi.2003.09.005","title":"Peptide and protein de novo sequencing by mass spectrometry","year":2003,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":151,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada","keywords":"Mass spectrometry; Computational biology; Protein sequencing; DNA sequencing; Sequence (biology); Chemistry; Protein mass spectrometry; Derivatization; Sequence analysis; Bottom-up proteomics; Peptide sequence; Biology; Chromatography; Tandem mass spectrometry; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001717385,0.002102911,0.002173904,0.00147811,0.0002749937,0.0009257989,0.002295044,0.001441164,0.002582758],"category_scores_gemma":[0.0008918874,0.0005241623,0.0005065434,0.001436286,0.0009163377,0.00273548,0.001298108,0.002197014,0.005704487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004873131,"about_ca_system_score_gemma":0.0005913478,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002490603,"about_ca_topic_score_gemma":0.0003075123,"domain_scores_codex":[0.9995172,0.00005182005,0.00004386835,0.0001113916,0.0002410338,0.00003469882],"domain_scores_gemma":[0.9995553,0.0001343254,0.00006766515,0.00004839169,0.0001451592,0.00004918685],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002070893,0.0001527438,0.0001280203,0.00441596,0.0001007104,0.0004205131,0.00003872209,0.0006922244,0.1081143,0.007288909,0.01929289,0.8591478],"study_design_scores_gemma":[0.00007781792,0.00024782,0.0008205947,0.0004472265,0.0001333162,0.004134219,0.00003203432,0.001767988,0.1128406,0.008716836,0.8707195,0.00006199631],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004234097,0.8767253,0.1015422,0.002162003,0.004319516,0.000161102,0.0002484217,0.0005792796,0.01002805],"genre_scores_gemma":[0.008163283,0.9403,0.03755828,0.001532696,0.002049532,0.0001295571,0.0005748681,0.00008420237,0.009607504],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002582758,"threshold_uncertainty_score":0.009082556,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05808185856089105,"score_gpt":0.3791293267425718,"score_spread":0.3210474681816807,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}