{"id":"W2112514850","doi":"10.1111/j.1758-2229.2009.00022.x","title":"Environmental, genomic and taxonomic perspectives on methanotrophic <i>Verrucomicrobia</i>","year":2009,"lang":"en","type":"article","venue":"Environmental Microbiology Reports","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":486,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Norges Forskningsråd","keywords":"Verrucomicrobia; Biology; Alphaproteobacteria; Gammaproteobacteria; Anoxic waters; Phylum; Proteobacteria; Betaproteobacteria; Ecology; Acidobacteria; Planctomycetes; Endosymbiosis; Bacteria; 16S ribosomal RNA; Paleontology; Actinobacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001556654,0.0003398504,0.0002792289,0.00006867569,0.0001593024,0.00001496014,0.0001115662,0.000264889,0.0001630257],"category_scores_gemma":[0.00001025189,0.0003389358,0.0001257556,0.00002359748,0.0002934856,0.000008970909,0.000124529,0.0001753367,0.00008232713],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007757595,"about_ca_system_score_gemma":0.00001411267,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003817257,"about_ca_topic_score_gemma":0.000001150083,"domain_scores_codex":[0.9982478,0.00009478781,0.0003454968,0.0009096125,0.00003923053,0.0003630825],"domain_scores_gemma":[0.9991813,0.000007174962,0.000197976,0.0005077672,0.00000195029,0.0001038638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001318469,0.0001861881,0.001742775,0.000001807255,0.00004902184,0.00002916816,0.00006822538,0.00002822521,0.9927118,0.00001089069,0.003715426,0.00132463],"study_design_scores_gemma":[0.0008133035,0.0009576362,0.05482962,0.000008999011,0.00006600718,0.002820817,0.0002841614,0.000001154257,0.7590961,0.00005095559,0.180451,0.0006203082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942135,0.004563335,0.00006604787,0.0001303995,0.0003244397,0.0003117253,0.0001296229,0.00002019773,0.0002407932],"genre_scores_gemma":[0.9949869,0.001924936,0.0004977934,0.001242584,0.0002590299,0.00001152343,0.0004075702,0.0000318184,0.0006378509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2336157,"threshold_uncertainty_score":0.9999062,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003417724533738117,"score_gpt":0.1743343245103756,"score_spread":0.1709165999766375,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}