{"id":"W2112698132","doi":"10.1128/jb.01788-06","title":"Role of the PDZ Domains in <i>Escherichia coli</i> DegP Protein","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research; National Institutes of Health; Department of Education of Guangdong Province","keywords":"PDZ domain; Periplasmic space; Protease; Biology; Chaperone (clinical); Escherichia coli; Biochemistry; Proteases; Mutant; Cell biology; Bacterial outer membrane; Enzyme; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000437335,0.00009140102,0.0002029517,0.00004591348,0.00002185604,0.000003709514,0.000269814,0.0001863289,0.000006978066],"category_scores_gemma":[0.00009495147,0.00006127026,0.0001128616,0.0000940375,0.0001099684,0.000003523455,0.00008136022,0.0001981154,4.507679e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000172196,"about_ca_system_score_gemma":0.0001152108,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001291561,"about_ca_topic_score_gemma":0.0001374249,"domain_scores_codex":[0.9991435,0.00008682577,0.0004219408,0.00009260693,0.00007656375,0.0001785152],"domain_scores_gemma":[0.9992933,0.00001235327,0.0003814503,0.000183465,0.00008644901,0.0000429393],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002964999,0.00002943721,0.01080385,0.000006683851,0.00002481353,0.000005092809,0.00003915266,0.00001692208,0.9874878,0.0001927045,0.00001951437,0.001077531],"study_design_scores_gemma":[0.0008396869,0.0005564369,0.2189946,0.00003065076,0.0000128934,0.0001498777,0.00008602976,0.000006609881,0.7644975,0.001703353,0.01301627,0.0001060663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979436,0.0004124616,0.000692656,0.000104077,0.0001448055,0.0001316707,0.000004048101,9.42395e-7,0.0005657078],"genre_scores_gemma":[0.9975066,0.00002933005,0.001999835,0.0002245622,0.0001786604,0.00000164496,0.000002217343,0.000008742722,0.00004847824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2229903,"threshold_uncertainty_score":0.2498529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003462227564381208,"score_gpt":0.216746453528657,"score_spread":0.2132842259642758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}