{"id":"W2112732161","doi":"10.1158/1078-0432.ccr-07-4960","title":"Genomic Differences Between Pure Ductal Carcinoma <i>In Situ</i> of the Breast and that Associated with Invasive Disease: a Calibrated aCGH Study","year":2008,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; Ontario Institute for Cancer Research; University of Manitoba; University Health Network","funders":"University Health Network","keywords":"Ductal carcinoma; Breast cancer; Comparative genomic hybridization; Biology; Metastasis; Pathology; Cancer; Lymph node; Lymph; Oncology; Medicine; Genome; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000489343,0.000111583,0.0002371124,0.0000340862,0.0001705576,0.00001884806,0.0002961765,0.00009910943,0.00001761817],"category_scores_gemma":[0.0001547742,0.00007171574,0.00005611058,0.0001936497,0.0005923733,0.000006222844,0.0003180167,0.0002791148,6.108065e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003020289,"about_ca_system_score_gemma":0.0007118844,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005837171,"about_ca_topic_score_gemma":0.002680072,"domain_scores_codex":[0.9982281,0.0006013634,0.0002819504,0.0003445011,0.0002792861,0.0002648187],"domain_scores_gemma":[0.9991663,0.0001790609,0.0000942062,0.0002859826,0.000153275,0.0001212026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002169621,0.0001971005,0.9967085,0.00001290383,0.00009047901,0.00001590631,0.0002544155,0.000005716673,0.002327666,0.000005459005,0.0001101147,0.00005476665],"study_design_scores_gemma":[0.001058436,0.0004008496,0.9961578,0.00003140633,0.00002507349,0.000006131994,0.0006373185,0.00000353415,0.001534063,0.00003435666,0.00001680844,0.00009418813],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983607,0.0005344706,6.307836e-7,0.0003521758,0.00003328034,0.0004389928,0.0002126337,0.000003077976,0.00006401586],"genre_scores_gemma":[0.9992216,0.0002444792,0.000002340189,0.00003026695,0.0001240755,0.00006285868,0.00003142906,0.00001309378,0.0002698353],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002096355,"threshold_uncertainty_score":0.2924483,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1099815337234098,"score_gpt":0.3547301772067752,"score_spread":0.2447486434833654,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}