{"id":"W2112800304","doi":"10.1101/cshperspect.a016808","title":"Ubiquitin-Dependent Sorting in Endocytosis","year":2014,"lang":"en","type":"review","venue":"Cold Spring Harbor Perspectives in Biology","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences","keywords":"Endocytic cycle; Ubiquitin; Endosome; Endocytosis; Cell biology; Biology; Protein Sorting Signals; Internalization; Lysosome; Deubiquitinating enzyme; Protein targeting; Proteolysis; Membrane protein; Biochemistry; Membrane; Signal peptide; Peptide sequence; Intracellular; Enzyme; Receptor","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005410136,0.0004359384,0.001150028,0.0003354135,0.00004559125,0.00001873986,0.0004021664,0.000726072,0.0000272149],"category_scores_gemma":[0.0001430271,0.0004349804,0.0003630037,0.0001959255,0.0001375208,0.000003337344,0.0001488289,0.0005104936,0.00001530197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002144445,"about_ca_system_score_gemma":0.0001584053,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001102411,"about_ca_topic_score_gemma":0.000330827,"domain_scores_codex":[0.9974076,0.0002847092,0.0007031961,0.0009991172,0.00008164365,0.0005237662],"domain_scores_gemma":[0.9990565,0.00005145727,0.0002813361,0.0005039112,0.00003783614,0.00006895382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004491408,0.001995262,0.03406492,0.02417392,0.001634738,0.0005453302,0.001608006,0.00009509386,0.5260601,0.1965413,0.00003022141,0.2128019],"study_design_scores_gemma":[0.0006376956,0.0001929309,0.0004472617,0.001872676,0.0001069172,0.000005418174,0.000100886,0.00001142359,0.001328686,0.00003775171,0.9944925,0.0007657955],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006212702,0.99129,0.001042708,0.0000114078,0.0002575578,0.0005626291,0.00001652673,0.00002230824,0.0005841783],"genre_scores_gemma":[0.08367018,0.9153316,0.0001514013,0.000018793,0.0003965365,0.0001630856,0.0001501059,0.00006346533,0.00005483157],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9944623,"threshold_uncertainty_score":0.9998102,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02452941274946741,"score_gpt":0.3102169209355499,"score_spread":0.2856875081860825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}