{"id":"W2112829037","doi":"10.1128/jvi.01236-09","title":"Clade-Specific Evolution Mediated by HLA-B*57/5801 in Human Immunodeficiency Virus Type 1 Clade A1 p24","year":2009,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Bill and Melinda Gates Foundation","keywords":"Clade; Biology; HLA-B; Genetics; Virology; Epitope; Virus; Human leukocyte antigen; Gene; Phylogenetics; Antigen","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003464585,0.0001633443,0.0001835831,0.0001980784,0.0004244055,0.0003134171,0.0001614896,0.0002463688,0.001223284],"category_scores_gemma":[0.001134217,0.0001832928,0.0001657496,0.0001365005,0.0002377241,0.000163582,0.0002241025,0.000353493,0.0001678418],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001907983,"about_ca_system_score_gemma":0.0001671144,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001913776,"about_ca_topic_score_gemma":0.002239073,"domain_scores_codex":[0.9997541,0.00008547802,0.00001573877,0.00006617,0.00002944111,0.00004907761],"domain_scores_gemma":[0.9996654,0.00008113057,0.0001185162,0.00003872799,0.00002916831,0.00006694232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000644322,0.0001173823,0.9405525,0.00002244476,0.00006124483,0.0007568279,0.000452696,0.0001468475,0.04822394,0.0001497239,0.0002545407,0.008617546],"study_design_scores_gemma":[0.00003538024,0.000409896,0.9919931,0.00001972797,0.00004934475,0.002819421,0.0004170534,0.0007145639,0.002956543,0.0001146928,0.0004619343,0.000008397888],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997323,0.00006097588,0.00004398685,0.000009222431,0.000001099273,0.000002069676,0.00001514345,8.420636e-7,0.0001344271],"genre_scores_gemma":[0.9998024,0.00003587739,0.00004676006,0.00001382438,0.000001939398,0.000002224325,0.00002527628,0.000001313406,0.00007039728],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001913776,"threshold_uncertainty_score":0.004092336,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01431019428015942,"score_gpt":0.2769048861387978,"score_spread":0.2625946918586384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}