{"id":"W2113031526","doi":"10.1099/ijs.0.64061-0","title":"Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra","year":2006,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Genome Atlantic; Michael Smith Health Research BC; Genome Canada","keywords":"Plastid; Dinoflagellate; Biology; Peridinin; Lineage (genetic); Phylogenetic tree; Phylogenetics; Evolutionary biology; Algae; Genome; Gene; Horizontal gene transfer; Nuclear gene; Genetics; Botany; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004345435,0.0001057363,0.0002609743,0.0001289558,0.00002469327,0.000006309155,0.0003506147,0.0001064253,0.00001405174],"category_scores_gemma":[0.00007089021,0.00007750761,0.0001061196,0.00003417593,0.0001488151,0.000007945281,0.00005787086,0.000100765,0.000001523592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008747094,"about_ca_system_score_gemma":0.0001154561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004711299,"about_ca_topic_score_gemma":0.00001592564,"domain_scores_codex":[0.9988503,0.0002466603,0.000565644,0.0001206267,0.0001015307,0.0001152039],"domain_scores_gemma":[0.9991583,0.00005935051,0.0004742991,0.00009428772,0.0001945648,0.00001925871],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004161099,0.0001439306,0.0352996,0.0006574788,0.0002096768,0.00005120136,0.0004540808,0.0003501006,0.9591154,0.0001822158,0.003103367,0.00001683261],"study_design_scores_gemma":[0.02098869,0.01141214,0.7659411,0.01268829,0.0008034658,0.03967926,0.007155498,0.0009969919,0.108261,0.003941812,0.02571085,0.002420832],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884194,0.009906752,0.0006354488,0.0001236763,0.0004006868,0.0002459502,0.00003266892,0.000001413598,0.0002339624],"genre_scores_gemma":[0.9991088,0.0001028583,0.0003590146,0.00008706601,0.0001638044,0.000007339909,0.00003789201,0.000004882294,0.0001283521],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8508544,"threshold_uncertainty_score":0.3160669,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01016570296649089,"score_gpt":0.2040320278671282,"score_spread":0.1938663249006373,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}