{"id":"W2113051934","doi":"10.1128/aac.01756-10","title":"Characterization of a Novel Arginine Catabolic Mobile Element (ACME) and Staphylococcal Chromosomal Cassette <i>mec</i> Composite Island with Significant Homology to Staphylococcus epidermidis ACME Type II in Methicillin-Resistant Staphylococcus aureus Genotype ST22-MRSA-IV","year":2011,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Centre for Applied Research in Cancer Control","keywords":"Methicillin-resistant Staphylococcus aureus; Microbiology; Biology; Staphylococcus aureus; Mobile genetic elements; Multilocus sequence typing; Staphylococcal infections; Staphylococcus epidermidis; SCCmec; Genetics; Genotype; Genome; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004230246,0.0007774234,0.001454082,0.0005023573,0.0002499349,0.00005384244,0.0003282435,0.0003458524,0.0002305635],"category_scores_gemma":[0.0000261058,0.0006641186,0.0001394363,0.0008647741,0.0005711646,0.000180015,0.0002176289,0.0004866945,0.000005909961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001257787,"about_ca_system_score_gemma":0.000283067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001002135,"about_ca_topic_score_gemma":0.000675684,"domain_scores_codex":[0.9961932,0.0001259767,0.001151507,0.001145274,0.000408692,0.0009753109],"domain_scores_gemma":[0.9978343,0.00007252098,0.0005428306,0.0007129954,0.0004262038,0.0004112075],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006438223,0.001558791,0.04923758,0.0003329409,0.0003691077,0.0001270522,0.004246599,0.00001912198,0.9356957,0.00006617215,0.0006007424,0.001307977],"study_design_scores_gemma":[0.01225962,0.004486114,0.4290325,0.0007510164,0.0003215404,0.00002833982,0.000328199,0.0001656807,0.5377927,0.00001846493,0.01357483,0.001240945],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937969,0.0001598397,0.001162767,0.0008999787,0.0001516897,0.002825406,0.0008529904,0.0000608748,0.0000894996],"genre_scores_gemma":[0.9896126,0.00125813,0.004130226,0.0042266,0.0001421608,0.00009066117,0.0002666798,0.0001398798,0.0001330878],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.397903,"threshold_uncertainty_score":0.999581,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02168150240229225,"score_gpt":0.264878680116892,"score_spread":0.2431971777145998,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}