{"id":"W2113311542","doi":"10.1371/journal.pone.0023624","title":"The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Michael Smith Health Research BC; Joint Genome Institute; Tula Foundation; National Center for Research Resources; Canadian Institute for Advanced Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; U.S. Department of Energy; National Science Foundation","keywords":"Plastid; Biology; Organelle; Genome; Mitochondrial DNA; Heteroplasmy; Green algae; Chloroplast DNA; Chloroplast; Genetics; Algae; Evolutionary biology; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008835758,0.0002620671,0.0002016718,0.0008924885,0.0005025762,0.000454693,0.0001242224,0.0003399704,0.002233898],"category_scores_gemma":[0.0003983625,0.0001111366,0.0001836502,0.001051214,0.0002571074,0.0004454086,0.0003435794,0.0003085386,0.0004992499],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003363895,"about_ca_system_score_gemma":0.0003503162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003042246,"about_ca_topic_score_gemma":0.009069094,"domain_scores_codex":[0.999931,0.000006538313,0.000003847956,0.00002985118,0.00001784625,0.0000109608],"domain_scores_gemma":[0.9996185,0.00007738757,0.0001452791,0.00003858719,0.00005187925,0.00006841208],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002677308,0.00001708638,0.03319845,0.0002820994,0.00004935779,0.0003442238,0.0002416351,0.0006421916,0.9328276,0.000812056,0.0001651915,0.03115236],"study_design_scores_gemma":[0.00002098564,0.0002261526,0.7653933,0.0001325128,0.0002066875,0.003965245,0.0009439873,0.002791359,0.1911069,0.003771699,0.03136456,0.00007670445],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850114,0.004241861,0.005024116,0.0002226996,0.00003480549,0.000007682839,0.002611642,0.0001475811,0.002698215],"genre_scores_gemma":[0.9911045,0.001495197,0.004849044,0.00006536689,0.0000148607,0.000005415543,0.001646306,0.00003217706,0.0007870711],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003042246,"threshold_uncertainty_score":0.007473111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01406546204364295,"score_gpt":0.1725280045803243,"score_spread":0.1584625425366813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}