{"id":"W2113344888","doi":"10.1016/j.ympev.2011.11.030","title":"Opsin gene duplication and divergence in ray-finned fish","year":2011,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Gene duplication; Biology; Opsin; Evolutionary biology; Gene; Tandem exon duplication; Gene family; Gene conversion; Phylogenetic tree; Genetics; Genome; Most recent common ancestor; Phylogenetics; Rhodopsin","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001008814,0.0001170744,0.00008198278,0.00005356624,0.00005246891,0.00001181033,0.00007208611,0.0001054939,0.000005007175],"category_scores_gemma":[0.00002400143,0.000126258,0.00002259257,0.00009235796,0.00007483899,0.000003033783,0.00009775903,0.00003987391,0.000001880142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009249524,"about_ca_system_score_gemma":0.00002355518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005432554,"about_ca_topic_score_gemma":0.00005113122,"domain_scores_codex":[0.9992719,0.00003381552,0.0001458043,0.0003031368,0.00007468119,0.0001706974],"domain_scores_gemma":[0.9997043,0.000001890941,0.00004299859,0.000150411,0.0000404773,0.00005991178],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005937682,0.00004495382,0.1844761,0.00001132209,0.00001567404,0.000003666283,0.00008667119,0.00003052559,0.8122756,0.0007209544,0.00007309532,0.002201949],"study_design_scores_gemma":[0.0004174862,0.0001358051,0.8408124,0.00000626466,0.00001181726,0.000007151215,0.00003579138,0.000303124,0.156236,0.001243087,0.0005946045,0.0001964888],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879806,0.002428112,0.00883646,0.00005855593,0.00004305904,0.0001471835,0.000004312041,0.000005158908,0.000496569],"genre_scores_gemma":[0.9956332,0.001173849,0.002921783,0.0001265397,0.00001585432,0.00001946453,0.00005256092,0.00001139852,0.00004534714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6563362,"threshold_uncertainty_score":0.5148652,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008467633145257721,"score_gpt":0.1989166288811825,"score_spread":0.1904489957359248,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}