{"id":"W2113657329","doi":"10.1093/gbe/evv035","title":"Insights on the Emergence of Mycobacterium tuberculosis from the Analysis of Mycobacterium kansasii","year":2015,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique; McGill University and Génome Québec Innovation Centre; Armand Frappier Museum; McGill University Health Centre; McGill University","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Agence Nationale de la Recherche","keywords":"Mycobacterium kansasii; Biology; Mycobacterium tuberculosis; Pathogen; Virulence; Microbiology; Tuberculosis; Genetics; Mycobacterium; Plasmid; Genome; Human pathogen; Virology; Gene; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003636093,0.0001429953,0.0004041107,0.0001412848,0.00008993915,0.000006422656,0.0001606347,0.0001547102,0.0002990864],"category_scores_gemma":[0.0002944667,0.00007401333,0.0001515808,0.0006590633,0.0003426959,0.00005199331,0.0000875808,0.0001617988,0.0000207783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004105567,"about_ca_system_score_gemma":0.00009342454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001130072,"about_ca_topic_score_gemma":0.0001345644,"domain_scores_codex":[0.9987132,0.0002829727,0.0003340373,0.0002663608,0.0001802157,0.0002232457],"domain_scores_gemma":[0.9986074,0.0003703769,0.0001500787,0.000472873,0.0002587712,0.0001405069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008676657,0.000164593,0.7587357,0.00002921124,0.001544318,0.000001780154,0.001063504,0.00001125352,0.2338398,0.002242814,0.001095388,0.0004039595],"study_design_scores_gemma":[0.0003264318,0.0004306266,0.9943592,0.00002155714,0.0007630441,0.000002437993,0.0004573932,0.0001361841,0.001615338,0.0006638353,0.001146292,0.000077636],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943272,0.002334464,0.00009625237,0.002021109,0.0001833701,0.0002436124,0.0003345491,0.00001232044,0.0004470547],"genre_scores_gemma":[0.9983568,0.0008703597,0.00003779752,0.0002212319,0.0001692841,0.00002885261,0.0002825964,0.000006556546,0.00002648501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2356235,"threshold_uncertainty_score":0.3274786,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03235777735659175,"score_gpt":0.2845780220117202,"score_spread":0.2522202446551285,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}