{"id":"W2113720993","doi":"10.1128/jb.00179-07","title":"A Large Gene Cluster in <i>Burkholderia xenovorans</i> Encoding Abietane Diterpenoid Catabolism","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Abietane; Biochemistry; Dioxygenase; Gene cluster; Catabolism; Gene; Gammaproteobacteria; Terpenoid; Metabolism","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007303916,0.0002844114,0.0002638177,0.0004256457,0.000333473,0.0003180186,0.0001782368,0.0003163935,0.0009389038],"category_scores_gemma":[0.0001842929,0.0001666157,0.0002133403,0.0006162769,0.0001356863,0.0002208282,0.0002719562,0.0002744209,0.0007200838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003152631,"about_ca_system_score_gemma":0.0003202644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001629252,"about_ca_topic_score_gemma":0.001712147,"domain_scores_codex":[0.9998895,0.000007596328,0.000005047656,0.00005058105,0.00002190762,0.00002535732],"domain_scores_gemma":[0.99984,0.00002893766,0.0000403285,0.00001336716,0.00003056058,0.00004687827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001273741,0.0000162925,0.00169307,0.00006581463,0.000004205455,0.0001146413,0.00006055928,0.00006439509,0.9947643,0.00007778598,0.0001531562,0.002858541],"study_design_scores_gemma":[0.00007123368,0.0004943121,0.6484751,0.0001317747,0.00009986403,0.003022135,0.0006642404,0.004329106,0.3122355,0.0009660844,0.02944204,0.00006857084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849237,0.001539269,0.003796835,0.00014872,0.00002164494,0.00005567143,0.007126218,0.0002324488,0.00215549],"genre_scores_gemma":[0.9540476,0.0009119633,0.01061604,0.000228069,0.00003628751,0.0001669845,0.02853261,0.00008411277,0.005376255],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001629252,"threshold_uncertainty_score":0.003239512,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007424850316888157,"score_gpt":0.2344440967617854,"score_spread":0.2270192464448972,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}