{"id":"W2113832037","doi":"10.1016/j.molcel.2005.06.006","title":"Crystal Structure of Bacteriophage λcII and Its DNA Complex","year":2005,"lang":"en","type":"article","venue":"Molecular Cell","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Biology; RNA polymerase; Transcription (linguistics); Molecular biology; Protein subunit; Bacteriophage; Polymerase; DNA; RNA polymerase I; RNA polymerase II; RNA; Sigma factor; Specificity factor; Promoter; RNA-dependent RNA polymerase; Genetics; Gene; Gene expression; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004887587,0.0001408386,0.0001417415,0.00002689129,0.00003499313,0.00001317636,0.0001335306,0.0001298477,0.0001473685],"category_scores_gemma":[0.0000131452,0.000136704,0.00006363189,0.00003646918,0.00003046294,0.000002921345,0.00009080596,0.00004433578,0.000005679194],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004018371,"about_ca_system_score_gemma":0.00001890699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002063195,"about_ca_topic_score_gemma":0.000003431063,"domain_scores_codex":[0.9992744,0.00005169908,0.0001528189,0.0002474986,0.0001042564,0.0001693639],"domain_scores_gemma":[0.9995844,0.000003513897,0.00007250086,0.0002303346,0.00003813057,0.00007114511],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002627636,0.000022645,0.00001838882,0.00003533644,0.00001653436,0.000004527127,0.000025101,0.00001474414,0.997895,0.00009566638,0.00008297789,0.001762814],"study_design_scores_gemma":[0.0003224504,0.0001294901,0.0002345588,0.000006062999,0.00001448185,0.00001117007,0.00001146676,0.0000373611,0.9785218,0.00005031846,0.0205152,0.0001456786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950082,0.001634457,0.001187224,0.00006776492,0.00003109773,0.0001541612,0.00004666805,0.000006723934,0.00186371],"genre_scores_gemma":[0.9961956,0.00005263437,0.003018109,0.0002345624,0.000070897,0.000003022207,0.00005539122,0.0000232736,0.0003465617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02043222,"threshold_uncertainty_score":0.5574626,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006839842514284991,"score_gpt":0.2074930995271934,"score_spread":0.2006532570129084,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}