{"id":"W2113863699","doi":"10.1093/gbe/evu188","title":"Lineage-Specific Conserved Noncoding Sequences of Plant Genomes: Their Possible Role in Nucleosome Positioning","year":2014,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Lineage (genetic); Genome; Nucleosome; Evolutionary biology; Genetics; Gene; Histone","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002238317,0.00008648275,0.0001526421,0.00002008311,0.0001690053,0.00001245497,0.00009028699,0.0001098988,0.00008794429],"category_scores_gemma":[0.00001014407,0.00003895841,0.00003389265,0.0001528064,0.00009738442,0.00004779183,0.00003918547,0.0000654876,0.00000888262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002337753,"about_ca_system_score_gemma":0.000007489864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001858587,"about_ca_topic_score_gemma":0.0003506583,"domain_scores_codex":[0.9992835,0.0001011064,0.0002066988,0.0002005829,0.00003333906,0.0001747895],"domain_scores_gemma":[0.9996919,0.0001214374,0.000081989,0.00003651007,0.00002889925,0.00003928845],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001828547,0.00002636164,0.09133148,0.000003673404,0.000004999595,2.485376e-7,0.0001850651,0.00002958992,0.9027362,0.0033543,0.0000015605,0.002308242],"study_design_scores_gemma":[0.0002014075,0.0003265165,0.9831356,0.0000217987,0.000004887237,0.00001412389,0.0004537702,0.00080837,0.004349995,0.007399985,0.003147729,0.0001357484],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965934,0.002465536,0.00004858852,0.0002770803,0.00006367106,0.00009113314,0.000118473,0.00001874848,0.0003233672],"genre_scores_gemma":[0.9991392,0.0002723181,0.0002025209,0.00003667066,0.0001512482,0.000007455865,0.0001757876,5.61118e-7,0.00001425231],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8983862,"threshold_uncertainty_score":0.1588678,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01562444807190856,"score_gpt":0.2003086136629432,"score_spread":0.1846841655910347,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}