{"id":"W2113886620","doi":"10.1530/rep-08-0533","title":"Revealing the bovine embryo transcript profiles during early <i>in vivo</i> embryonic development","year":2009,"lang":"en","type":"article","venue":"Reproduction","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Rheinische Friedrich-Wilhelms-Universität Bonn; Universität für Bodenkultur Wien","keywords":"Biology; Embryogenesis; Gene expression profiling; Embryo; Embryonic stem cell; Gene expression; In vivo; Messenger RNA; Gene; Cell biology; Developmental biology; RNA; Genetics; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002972623,0.000113437,0.00008745684,0.00003416278,0.0001486103,0.00001449071,0.0001395284,0.00009850811,0.000005821899],"category_scores_gemma":[0.00002628416,0.00009117223,0.00004900586,0.00013448,0.0000341455,0.000003893329,0.00002238266,0.0001084051,0.000003648747],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002143275,"about_ca_system_score_gemma":0.00004090575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001018102,"about_ca_topic_score_gemma":0.00001427529,"domain_scores_codex":[0.9990147,0.00004617134,0.0001969629,0.0004795105,0.00007215526,0.0001904543],"domain_scores_gemma":[0.9993669,0.000001482601,0.00006141861,0.0005059344,0.00003920937,0.00002507439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003561738,0.00004064923,0.0003309173,0.000006581473,0.000007662902,8.774525e-7,0.00005164847,0.00002230761,0.9955066,0.0001457445,0.0003525879,0.003498813],"study_design_scores_gemma":[0.0001383392,0.00009032522,0.0286729,0.0000136266,0.000005763702,0.00003127462,0.00001839503,0.000003867229,0.9311557,0.00008564731,0.03966369,0.0001205091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994353,0.0007781468,0.001585917,0.002278133,0.00005915235,0.0003879932,0.000001848738,0.00003959354,0.0005162348],"genre_scores_gemma":[0.9956742,0.0001796764,0.001789879,0.0001578532,0.0002400417,0.00009180703,0.00003058084,0.00001149946,0.001824483],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06435093,"threshold_uncertainty_score":0.3717896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00771417145524519,"score_gpt":0.23806289810884,"score_spread":0.2303487266535948,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}