{"id":"W2113892406","doi":"10.1093/bioinformatics/btm491","title":"<i>CellLine</i>, a stochastic cell lineage simulator","year":2007,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Lineage (genetic); Computer science; Cellular differentiation; Cell fate determination; Bistability; Gene regulatory network; Biology; Gene; Biological system; Computational biology; Genetics; Physics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005298165,0.0006266102,0.0003963636,0.0003413314,0.0003812961,0.0006415723,0.001815988,0.001039745,0.01517024],"category_scores_gemma":[0.00161917,0.0003741634,0.0005848135,0.0004383388,0.0004148762,0.0006210506,0.0006062591,0.00088107,0.002186722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007492008,"about_ca_system_score_gemma":0.0009450727,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006211241,"about_ca_topic_score_gemma":0.005146835,"domain_scores_codex":[0.9998366,0.00004798201,0.000009365916,0.00002799134,0.00005363715,0.00002433702],"domain_scores_gemma":[0.9991347,0.0004800925,0.00006702526,0.00008097359,0.0001649354,0.00007224015],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002069996,0.0001108538,0.003574806,0.000366036,0.00007969706,0.0002238931,0.0001407203,0.9227828,0.007391278,0.02549106,0.01877248,0.02085925],"study_design_scores_gemma":[0.00005832209,0.0000303284,0.000129279,0.00001339129,0.000009658401,0.00002806626,0.000005497284,0.9763222,0.003781877,0.001796869,0.01781492,0.000009479289],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.08677465,0.0006214553,0.8286008,0.0007153458,0.0002884768,0.0003541709,0.01190432,0.03512333,0.03561751],"genre_scores_gemma":[0.4466911,0.0007898973,0.5145961,0.0005285939,0.00006394913,0.001339514,0.01380012,0.005721879,0.01646874],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01517024,"threshold_uncertainty_score":0.05074954,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006656163944545625,"score_gpt":0.2249542220159751,"score_spread":0.2182980580714295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}