{"id":"W2113990919","doi":"10.1128/jvi.02742-06","title":"An Integrative Bioinformatic Approach for Studying Escape Mutations in Human Immunodeficiency Virus Type 1<i>gag</i>in the Pumwani Sex Worker Cohort","year":2007,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; U.S. Public Health Service; National Institutes of Health","keywords":"Biology; Human immunodeficiency virus (HIV); Virology; Mutation; Lentivirus; Virus; Genetics; Computational biology; Gene; Viral disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001665334,0.0004795849,0.0004990943,0.002806989,0.0006764808,0.0009175976,0.0006348647,0.0004453901,0.002090462],"category_scores_gemma":[0.003006532,0.0001704993,0.00076602,0.001503311,0.0002356936,0.000192864,0.0007792112,0.0004494934,0.0002897589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000475096,"about_ca_system_score_gemma":0.0006158139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005397707,"about_ca_topic_score_gemma":0.008613572,"domain_scores_codex":[0.9993209,0.0002776982,0.0000423691,0.0001990171,0.0000965244,0.00006348193],"domain_scores_gemma":[0.9990612,0.0004807322,0.0001452982,0.00005137461,0.00009855325,0.000162868],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001409718,0.000669552,0.8683637,0.0002987562,0.001420247,0.001755666,0.00113892,0.006736077,0.02617436,0.001048991,0.002761142,0.08822289],"study_design_scores_gemma":[0.0001293884,0.0007018812,0.9025085,0.00006097121,0.0007529461,0.001356652,0.002398252,0.08270935,0.003464821,0.001490284,0.00437014,0.00005691321],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9854668,0.0002492269,0.00953422,0.0001983322,0.00001747568,0.0001830156,0.003286639,0.0002642557,0.0007999938],"genre_scores_gemma":[0.9593667,0.0001210255,0.03307653,0.0001442654,0.00002716562,0.0001828524,0.006458924,0.00008496421,0.0005374776],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005397707,"threshold_uncertainty_score":0.01073259,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02390963500255083,"score_gpt":0.3263914101507035,"score_spread":0.3024817751481527,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}