{"id":"W2114102020","doi":"10.1099/jmm.0.000006-0","title":"Genetic and antigenic characterization of Canadian invasive Neisseria meningitidis serogroup C (MenC) case isolates in the post-MenC conjugate vaccine era, 2009-2013","year":2015,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Institut National de Santé Publique du Québec; Saskatchewan Disease Control Laboratory; Provincial Laboratory of Public Health; Manitoba Health; BC Mental Health & Substance Use Services; Public Health Agency of Canada","funders":"European Commission; Wellcome Trust","keywords":"Neisseria meningitidis; Biology; Serotype; Gene; Conjugate vaccine; Neisseria; Antigen; Microbiology; Genetics; Virology; Immunization; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008784541,0.0001572614,0.0004302023,0.0004738144,0.00008430539,0.00001723759,0.0002422491,0.000402964,0.0005113205],"category_scores_gemma":[0.0002806826,0.0001026319,0.00006214543,0.0002736655,0.0001315751,0.0001064494,0.00005260725,0.0004373342,0.00001735004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000035259,"about_ca_system_score_gemma":0.0004560202,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.0327002,"about_ca_topic_score_gemma":0.06065338,"domain_scores_codex":[0.9983671,0.0004666522,0.0007004857,0.0001457272,0.00001798456,0.0003020004],"domain_scores_gemma":[0.9989409,0.0001642037,0.0003859993,0.0001275661,0.000261474,0.0001197865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001453414,0.0000801144,0.01500378,0.00001406014,0.0001245286,0.0001586901,0.001036538,7.125515e-7,0.9810611,0.00004091285,0.001414536,0.0009196738],"study_design_scores_gemma":[0.01702221,0.008233842,0.422428,0.0005731369,0.0004862183,0.3551805,0.005398171,0.00002780744,0.09396563,0.0003227912,0.09544779,0.0009139295],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912398,0.002313226,0.00001214163,0.005231376,0.0009559016,0.0001652723,0.00006868964,0.000003887963,0.000009646197],"genre_scores_gemma":[0.997829,0.001429339,0.00004922074,0.0004719881,0.0001142166,0.000003427865,0.00007354464,0.000009241559,0.00001998204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8870955,"threshold_uncertainty_score":0.9737411,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01352971475769511,"score_gpt":0.2350964833638498,"score_spread":0.2215667686061547,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}