{"id":"W2114120528","doi":"10.1128/jb.01683-07","title":"Proteomic, Microarray, and Signature-Tagged Mutagenesis Analyses of Anaerobic<i>Pseudomonas aeruginosa</i>at pH 6.5, Likely Representing Chronic, Late-Stage Cystic Fibrosis Airway Conditions","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Université Laval","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute","keywords":"Biology; Anaerobic exercise; Pseudomonas aeruginosa; Transcriptome; Microbiology; Cystic fibrosis; Cellular respiration; Gene; Anaerobic bacteria; Bacteria; Biochemistry; Genetics; Gene expression; Mitochondrion; Physiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004742544,0.0003055597,0.001225409,0.0005660102,0.0002428924,0.00001962063,0.0002446178,0.0002343973,0.0004303932],"category_scores_gemma":[0.001079778,0.0002454699,0.000348448,0.0003821922,0.0008512079,0.0002655878,0.0001894955,0.0005835851,0.00001061947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002660255,"about_ca_system_score_gemma":0.0004647009,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009883039,"about_ca_topic_score_gemma":0.00002272761,"domain_scores_codex":[0.9971617,0.0003375835,0.001180922,0.0003925672,0.0003985943,0.0005286246],"domain_scores_gemma":[0.9970114,0.0006068504,0.001125419,0.0004044604,0.0005353088,0.0003165463],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001343202,0.0001423996,0.01797457,0.0003144511,0.0004148836,0.0005120196,0.0001896474,0.0003892468,0.9777219,0.000003607071,0.0007598522,0.0002341721],"study_design_scores_gemma":[0.003039123,0.002160678,0.2443747,0.0004089819,0.0002938361,0.002543097,0.00006114251,0.0002060464,0.7445917,0.00002015114,0.002070351,0.0002302016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945388,0.003797634,0.0002993314,0.0005207331,0.000175906,0.0004616943,0.00011158,0.00002209866,0.00007220075],"genre_scores_gemma":[0.9859544,0.001220451,0.01159941,0.00009843206,0.0002720655,0.00001587697,0.00004823136,0.00003956964,0.0007515391],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2331302,"threshold_uncertainty_score":0.9999998,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02705327274279909,"score_gpt":0.3180621955620667,"score_spread":0.2910089228192677,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}